User profiles for "author:Heled J"
Joseph HeledAuckland University Verified email at cs.auckland.ac.nz Cited by 17545 |
Bayesian inference of species trees from multilocus data
J Heled, AJ Drummond - Molecular biology and evolution, 2009 - academic.oup.com
Until recently, it has been common practice for a phylogenetic analysis to use a single gene
sequence from a single individual organism as a proxy for an entire species. With …
sequence from a single individual organism as a proxy for an entire species. With …
BEAST 2: a software platform for Bayesian evolutionary analysis
We present a new open source, extensible and flexible software platform for Bayesian
evolutionary analysis called BEAST 2. This software platform is a re-design of the popular …
evolutionary analysis called BEAST 2. This software platform is a re-design of the popular …
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …
years with major new advances in nearly all aspects of the joint modelling of evolutionary …
Bayesian inference of population size history from multiple loci
J Heled, AJ Drummond - BMC evolutionary biology, 2008 - Springer
Background Effective population size (N e) is related to genetic variability and is a basic
parameter in many models of population genetics. A number of methods for inferring current …
parameter in many models of population genetics. A number of methods for inferring current …
Calibrated tree priors for relaxed phylogenetics and divergence time estimation
J Heled, AJ Drummond - Systematic biology, 2012 - academic.oup.com
The use of fossil evidence to calibrate divergence time estimation has a long history. More
recently, Bayesian Markov chain Monte Carlo has become the dominant method of …
recently, Bayesian Markov chain Monte Carlo has become the dominant method of …
Looking for trees in the forest: summary tree from posterior samples
J Heled, RR Bouckaert - BMC evolutionary biology, 2013 - Springer
Background Bayesian phylogenetic analysis generates a set of trees which are often
condensed into a single tree representing the whole set. Many methods exist for selecting a …
condensed into a single tree representing the whole set. Many methods exist for selecting a …
CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS
Estimates of the timing of divergence are central to testing the underlying causes of
speciation. Relaxed molecular clocks and fossil calibration have improved these estimates; …
speciation. Relaxed molecular clocks and fossil calibration have improved these estimates; …
DensiTree 2: Seeing trees through the forest
RR Bouckaert, J Heled - BioRxiv, 2014 - biorxiv.org
Abstract Motivation Phylogenetic analysis like Bayesian MCMC or bootstrapping result in a
collection of trees. Trees are discrete objects and it is generally difficult to get a mental grip …
collection of trees. Trees are discrete objects and it is generally difficult to get a mental grip …
Evaluating a multigene environmental DNA approach for biodiversity assessment
Background There is an increasing demand for rapid biodiversity assessment tools that
have a broad taxonomic coverage. Here we evaluate a suite of environmental DNA (eDNA) …
have a broad taxonomic coverage. Here we evaluate a suite of environmental DNA (eDNA) …
Computational performance and statistical accuracy of* BEAST and comparisons with other methods
Under the multispecies coalescent model of molecular evolution, gene trees have
independent evolutionary histories within a shared species tree. In comparison, supermatrix …
independent evolutionary histories within a shared species tree. In comparison, supermatrix …