Posterior summarization in Bayesian phylogenetics using Tracer 1.7

A Rambaut, AJ Drummond, D Xie, G Baele… - Systematic …, 2018 - academic.oup.com
Cancer is one of the leading causes of death worldwide. There is a definite need for novel
approaches to improve the diagnostics and treatment of cancers. The pathological …

Genetic load: genomic estimates and applications in non-model animals

G Bertorelle, F Raffini, M Bosse, C Bortoluzzi… - Nature Reviews …, 2022 - nature.com
Genetic variation, which is generated by mutation, recombination and gene flow, can reduce
the mean fitness of a population, both now and in the future. This 'genetic load'has been …

Bayesian phylogenetics with BEAUti and the BEAST 1.7

AJ Drummond, MA Suchard, D Xie… - Molecular biology and …, 2012 - academic.oup.com
Computational evolutionary biology, statistical phylogenetics and coalescent-based
population genetics are becoming increasingly central to the analysis and understanding of …

BEAST 2: a software platform for Bayesian evolutionary analysis

R Bouckaert, J Heled, D Kühnert… - PLoS computational …, 2014 - journals.plos.org
We present a new open source, extensible and flexible software platform for Bayesian
evolutionary analysis called BEAST 2. This software platform is a re-design of the popular …

Bayesian inference of species trees from multilocus data

J Heled, AJ Drummond - Molecular biology and evolution, 2009 - academic.oup.com
Until recently, it has been common practice for a phylogenetic analysis to use a single gene
sequence from a single individual organism as a proxy for an entire species. With …

How to fail at species delimitation

BC Carstens, TA Pelletier, NM Reid… - Molecular ecology, 2013 - Wiley Online Library
Species delimitation is the act of identifying species‐level biological diversity. In recent
years, the field has witnessed a dramatic increase in the number of methods available for …

bModelTest: Bayesian phylogenetic site model averaging and model comparison

RR Bouckaert, AJ Drummond - BMC evolutionary biology, 2017 - Springer
Abstract Background Reconstructing phylogenies through Bayesian methods has many
benefits, which include providing a mathematically sound framework, providing realistic …

[BOOK][B] Bayesian evolutionary analysis with BEAST

AJ Drummond, RR Bouckaert - 2015 - books.google.com
What are the models used in phylogenetic analysis and what exactly is involved in Bayesian
evolutionary analysis using Markov chain Monte Carlo (MCMC) methods? How can you …

Unified framework to evaluate panmixia and migration direction among multiple sampling locations

P Beerli, M Palczewski - Genetics, 2010 - academic.oup.com
For many biological investigations, groups of individuals are genetically sampled from
several geographic locations. These sampling locations often do not reflect the genetic …

Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas

B Llamas, L Fehren-Schmitz, G Valverde, J Soubrier… - Science …, 2016 - science.org
The exact timing, route, and process of the initial peopling of the Americas remains uncertain
despite much research. Archaeological evidence indicates the presence of humans as far as …