| Title | Authors (identified) | Published In | Identifier(s) | Topic | Published Date |
|---|
| Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia | [1]Alastair M. Kilpatrick, [2]Farzana Rahman, [3]Audra Anjum, [4]Sayane Shome, [5]K M Salim Andalib, [6]Shrabonti Banik, [7]Sanjana F Chowdhury, [8]Peter Coombe, [9]Yesid Cuesta Astroz, [10]J Maxwell Douglas, ..., [22]Tomasz Zok, [23]Christine Orengo, [24]Iddo Friedberg, [25]Janet Kelso, [26]Lonnie R. Welch [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTAC236
| Wikipedia [curation]; education [curation]; open educational resource [curation]; computational biology [curation] | 2022-06-27 |
| Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO) | [1]Jolene Ramsey, [2]Brenley McIntosh, [3]Daniel Renfro, [4]Suzanne A. Aleksander, [5]Sandra A LaBonte, [6]Curtis Ross, [7]Adrienne E. Zweifel, [8]Nathan Liles, [9]Shabnam Farrar, [10]Jason J Gill, ..., [21]Meredith Defelice, [22]Erin L. Doyle, [23]Iddo Friedberg, [24]Susan M. R. Gurney, [25]Lee Hughes, ... [Full author list] | PLOS Computational Biology [curation] | DOI: 10.1371/JOURNAL.PCBI.1009463
| crowdsourcing [curation] | 2021-10-28 |
| Unraveling a Tangled Skein: Evolutionary Analysis of the Bacterial Gibberellin Biosynthetic Operon | [1]Ryan S Nett, [2]Huy Nguyen, [3]Raimund Nagel, [4]Ariana Marcassa, [5]Trevor C Charles, [6]Iddo Friedberg, [7]Reuben J. Peters [Full author list] | mSphere [curation] | DOI: 10.1128/MSPHERE.00292-20
PubMed: 32493722 | | 2020-06-03 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens | [1]Naihui Zhou, [2]Yuxiang Jiang, [3]Timothy R Bergquist, [4]Alexandra J Lee, [5]Balint Z Kacsoh, [6]Alex W Crocker, [7]Kimberley A Lewis, [8]George Georghiou, [9]Huy N Nguyen, [10]Md Nafiz Hamid, ..., [165]Casey S. Greene, [166]Predrag Radivojac, [167]Iddo Friedberg [Full author list] | Genome Biology [curation] | DOI: 10.1186/S13059-019-1835-8
PubMed: 31744546 | | 2019-11-19 |
| MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities | [1]Liu Cao, [2]Alexey A. Gurevich, [3]Kelsey L Alexander, [4]C Benjamin Naman, [5]Tiago Leão, [6]Evgenia Glukhov, [7]Tal Luzzatto-Knaan, [8]Fernando Vargas, [9]Robby Quinn, [10]Amina Bouslimani, ..., [19]Alex Shlemov, [20]Anton Korobeynikov, [21]Iddo Friedberg, [22]Rob Knight, [23]Kasthuri Venkateswaran, ... [Full author list] | Cell Systems [curation] | DOI: 10.1016/J.CELS.2019.09.004
PubMed: 31629686 | natural product [curation] | 2019-10-16 |
| SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier | [1]Xiao Hu, [2]Iddo Friedberg [Full author list] | GigaScience [curation] | DOI: 10.1093/GIGASCIENCE/GIZ118
PubMed: 31648300 | | 2019-10-01 |
| Novel antimicrobial peptide discovery using machine learning and biophysical selection of minimal bacteriocin domains | [1]Francisco R Fields, [2]Stefan D Freed, [3]Katelyn E Carothers, [4]Md Nafiz Hamid, [5]Daniel E Hammers, [6]Jessica N Ross, [7]Veronica R Kalwajtys, [8]Alejandro J Gonzalez, [9]Andrew D Hildreth, [10]Iddo Friedberg, [11]Shaun W Lee [Full author list] | Drug Development Research [curation] | DOI: 10.1002/DDR.21601
PubMed: 31483516 | machine learning [curation]; antimicrobial peptide [curation] | 2019-09-04 |
| Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants | [1]Laura Kasak, [2]Constantina Bakolitsa, [3]Zhiqiang Hu, [4]Changhua Yu, [5]Jasper Rine, [6]Dago F Dimster-Denk, [7]Gaurav Pandey, [8]Greet De Baets, [9]Yana Bromberg, [10]Chen Cao, ..., [33]John Moult, [34]Steven E. Brenner, [35]Iddo Friedberg [Full author list] | Human Mutation [curation] | DOI: 10.1002/HUMU.23868
PubMed: 31301157 | | 2019-09-03 |
| Tracing the ancestry of operons in bacteria | [1]Huy N Nguyen, [2]Ashish Jain, [3]Oliver Eulenstein, [4]Iddo Friedberg [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTZ053
PubMed: 30689726 | | 2019-09-01 |
| MaizeDIG: Maize Database of Images and Genomes | [1]Kyoung Tak Cho, [2]John L Portwood, [3]Jack M Gardiner, [4]Lisa C Harper, [5]Carolyn Lawrence-Dill, [6]Iddo Friedberg, [7]Carson M Andorf [Full author list] | Frontiers in Plant Science [curation] | DOI: 10.3389/FPLS.2019.01050
PubMed: 31555312 | | 2019-08-28 |
| Identifying antimicrobial peptides using word embedding with deep recurrent neural networks | [1]Md-Nafiz Hamid, [2]Iddo Friedberg [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTY937
PubMed: 30418485 | antimicrobial peptide [curation]; recurrent neural network [curation]; word embedding [curation] | 2019-06-01 |
| New Drosophila Long-Term Memory Genes Revealed by Assessing Computational Function Prediction Methods | [1]Balint Z. Kacsoh, [2]Stephen Barton, [3]Yuxiang Jiang, [4]Naihui Zhou, [5]Sean D Mooney, [6]Iddo Friedberg, [7]Predrag Radivojac, [8]Casey S. Greene, [9]Giovanni Bosco [Full author list] | G3 [curation] | DOI: 10.1534/G3.118.200867
PubMed: 30463884 | long-term memory [curation]; parasitoid wasp [curation] | 2019-01-09 |
| New Drosophila long-term memory genes revealed by assessing computational function prediction methods | [1]Balint Z Kacsoh, [2]Stephen Barton, [3]Yuxiang Jiang, [4]Naihui Zhou, [5]Sean D Mooney, [6]Iddo Friedberg, [7]Predrag Radivojac, [8]Casey S. Greene, [9]Giovanni Bosco [Full author list] | | DOI: 10.1101/414565
| long-term memory [curation] | 2018-09-11 |
| Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning | [1]Naihui Zhou, [2]Zachary D Siegel, [3]Scott Zarecor, [4]Nigel Lee, [5]Darwin A Campbell, [6]Carson M Andorf, [7]Dan Nettleton, [8]Carolyn Lawrence-Dill, [9]Baskar Ganapathysubramanian, [10]Jonathan W Kelly, [11]Iddo Friedberg [Full author list] | PLOS Computational Biology [curation] | DOI: 10.1371/JOURNAL.PCBI.1006337
PubMed: 30059508 | machine learning [curation]; crowdsourcing [curation]; image analysis [curation] | 2018-07-30 |
| Crowdsourcing Image Analysis for Plant Phenomics to Generate Ground Truth Data for Machine Learning | [1]Naihui Zhou, [2]Zachary D Siegel, [3]Scott Zarecor, [4]Nigel Lee, [5]Darwin A Campbell, [6]Carson M Andorf, [7]Dan Nettleton, [8]Carolyn Lawrence-Dill, [9]Baskar Ganapathysubramanian, [10]Jonathan W Kelly, [11]Iddo Friedberg [Full author list] | | DOI: 10.1101/265918
| machine learning [curation]; crowdsourcing [curation] | 2018-02-15 |
| Identifying Antimicrobial Peptides using Word Embedding with Deep Recurrent Neural Networks | [1]Md Nafiz Hamid, [2]Iddo Friedberg [Full author list] | | DOI: 10.1101/255505
| deep learning [curation]; word embedding [curation] | 2018-01-29 |
| Community-Wide Evaluation of Computational Function Prediction | [1]Iddo Friedberg, [2]Predrag Radivojac [Full author list] | Methods in Molecular Biology [curation] | DOI: 10.1007/978-1-4939-3743-1_10
PubMed: 27812940 | | 2017-01-01 |
| Chikungunya Virus in Febrile Humans and Aedes aegypti Mosquitoes, Yucatan, Mexico | [1]Nohemi Cigarroa-Toledo, [2]Bradley J Blitvich, [3]Rosa C Cetina-Trejo, [4]Lourdes G Talavera-Aguilar, [5]Carlos M Baak-Baak, [6]Oswaldo M Torres-Chablé, [7]Md-Nafiz Hamid, [8]Iddo Friedberg, [9]Pedro González-Martinez, [10]Gabriela Alonzo-Salomon, [11]Elsy P Rosado-Paredes, [12]Nubia Rivero-Cárdenas, [13]Guadalupe C Reyes-Solis, [14]Jose A Farfan-Ale, [15]Julián E García-Rejón, [16]Carlos Machain-Williams [Full author list] | Emerging Infectious Diseases [curation] | DOI: 10.3201/EID2210.152087
PubMed: 27347760 | Yucatán [curation]; chikungunya [curation]; Aedes aegypti [curation]; Chikungunya virus [curation] | 2016-10-15 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy | [1]Yuxiang Jiang, [2]Tal Ronnen Oron, [3]Wyatt T Clark, [4]Asma R Bankapur, [5]Daniel D'Andrea, [6]Rosalba Lepore, [7]Christopher Ronald Funk, [8]Indika Kahanda, [9]Karin Verspoor, [10]Asa Ben-Hur, ..., [144]Casey S. Greene, [145]Sean D Mooney, [146]Iddo Friedberg, [147]Predrag Radivojac [Full author list] | Genome Biology [curation] | DOI: 10.1186/S13059-016-1037-6
PubMed: 27604469 | protein function prediction [curation] | 2016-09-07 |
| A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins | [1]James T Morton, [2]Stefan D Freed, [3]Shaun W Lee, [4]Iddo Friedberg [Full author list] | BMC Bioinformatics [curation] | DOI: 10.1186/S12859-015-0792-9
PubMed: 26558535 | | 2015-11-11 |
| Ten simple rules for a community computational challenge | [1]Iddo Friedberg, [2]Mark N. Wass, [3]Sean D Mooney, [4]Predrag Radivojac [Full author list] | PLOS Computational Biology [curation] | DOI: 10.1371/JOURNAL.PCBI.1004150
PubMed: 25906249 | advertising [curation]; research funding [curation]; competition [curation]; protein structure prediction [curation]; challenge [curation] | 2015-04-01 |
| An event-driven approach for studying gene block evolution in bacteria | [1]David C Ream, [2]Asma R Bankapur, [3]Iddo Friedberg [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTV128
PubMed: 25717195 | bacterial evolution [curation] | 2015-02-25 |
| The impact of incomplete knowledge on the evaluation of protein function prediction: a structured-output learning perspective | [1]Yuxiang Jiang, [2]Wyatt T Clark, [3]Iddo Friedberg, [4]Predrag Radivojac [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTU472
PubMed: 25161254 | protein structure prediction [curation]; protein function prediction [curation] | 2014-09-01 |
| The automated function prediction SIG looks back at 2013 and prepares for 2014. | [1]Mark N. Wass, [2]Sean D Mooney, [3]Michal Linial, [4]Predrag Radivojac, [5]Iddo Friedberg [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTU117
PubMed: 24590444 | | 2014-03-03 |
| Comparative analysis of error-prone replication mononucleotide repeats across baculovirus genomes | [1]David C Ream, [2]Samuel T Murakami, [3]Emily E Schmidt, [4]Guo-Hua Huang, [5]Chun Liang, [6]Iddo Friedberg, [7]Xiao-Wen Cheng [Full author list] | Virus Research [curation] | DOI: 10.1016/J.VIRUSRES.2013.10.005
PubMed: 24140718 | | 2013-10-17 |
| The COMBREX project: design, methodology, and initial results | [1]Brian P Anton, [2]Yi-Chien Chang, [3]Peter Brown, [4]Han-Pil Choi, [5]Lina L Faller, [6]Jyotsna Guleria, [7]Zhenjun Hu, [8]Niels Klitgord, [9]Ami Levy-Moonshine, [10]Almaz Maksad, ..., [40]Woo-Suk Chang, [41]Manuel Ferrer, [42]Iddo Friedberg, [43]Michael Y. Galperin, [44]Julien Gobeill, ... [Full author list] | PLOS Biology [curation] | DOI: 10.1371/JOURNAL.PBIO.1001638
PubMed: 24013487 | | 2013-08-27 |
| Biases in the experimental annotations of protein function and their effect on our understanding of protein function space | [1]Alexandra M. Schnoes, [2]David C Ream, [3]Alexander W Thorman, [4]Patricia Babbitt, [5]Iddo Friedberg [Full author list] | PLOS Computational Biology [curation] | DOI: 10.1371/JOURNAL.PCBI.1003063
PubMed: 23737737 | bias [curation] | 2013-05-30 |
| Biological database of images and genomes: tools for community annotations linking image and genomic information | [1]Andrew T Oberlin, [2]Dominika A Jurkovic, [3]Mitchell F Balish, [4]Iddo Friedberg [Full author list] | Database [curation] | DOI: 10.1093/DATABASE/BAT016
PubMed: 23550062 | biological database [curation]; biocuration [curation] | 2013-04-02 |
| A large-scale evaluation of computational protein function prediction | [1]Predrag Radivojac, [2]Wyatt T Clark, [3]Tal Ronnen Oron, [4]Alexandra M. Schnoes, [5]Tobias Wittkop, [6]Artem Sokolov, [7]Kiley Graim, [8]Christopher Ronald Funk, [9]Karin Verspoor, [10]Asa Ben-Hur, ..., [100]Burkhard Rost, [101]Sean D Mooney, [102]Iddo Friedberg [Full author list] | Nature Methods [curation] | DOI: 10.1038/NMETH.2340
PubMed: 23353650 | cell biology [curation]; computational biology [curation]; protein function prediction [curation] | 2013-03-01 |
| Host-microbe interactions in the neonatal intestine: role of human milk oligosaccharides | [1]Sharon M. Donovan, [2]Mei Wang, [3]Min Li, [4]Iddo Friedberg, [5]Scott L Schwartz, [6]Robert S Chapkin [Full author list] | Advances in Nutrition [curation] | DOI: 10.3945/AN.112.001859
PubMed: 22585924 | oligosaccharide [curation] | 2012-05-01 |
| A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response | [1]Scott Schwartz, [2]Iddo Friedberg, [3]Ivan V Ivanov, [4]Laurie A Davidson, [5]Jennifer S Goldsby, [6]David B Dahl, [7]Damir Herman, [8]Mei Wang, [9]Sharon M. Donovan, [10]Robert S Chapkin [Full author list] | Genome Biology [curation] | DOI: 10.1186/GB-2012-13-4-R32
PubMed: 22546241 | metagenomics [curation] | 2012-04-30 |
| Protist diversity in a permanently ice-covered Antarctic lake during the polar night transition | [1]Scott Bielewicz, [2]Elanor Bell, [3]Weidong Kong, [4]Iddo Friedberg, [5]John C. Priscu, [6]Rachael M Morgan-Kiss [Full author list] | The ISME Journal [curation] | DOI: 10.1038/ISMEJ.2011.23
PubMed: 21390078 | protist [curation]; lake [curation]; biodiversity [curation] | 2011-03-10 |
| IPRStats: visualization of the functional potential of an InterProScan run. | [1]Ryan J Kelly, [2]David E Vincent, [3]Iddo Friedberg [Full author list] | BMC Bioinformatics [curation] | DOI: 10.1186/1471-2105-11-S12-S13
PubMed: 21210980 | visualization [curation] | 2010-12-21 |
| Meeting Report: BioSharing at ISMB 2010 | [1]Dawn Field, [2]Susanna-Assunta Sansone, [3]Edward F. DeLong, [4]Peter Sterk, [5]Iddo Friedberg, [6]Pascale Gaudet, [7]Susanna Lewis, [8]Renzo Kottmann, [9]Lynette Hirschman, [10]George M. Garrity, ... [Full author list] | Standards in genomic sciences [curation] | DOI: 10.4056/SIGS/1403501
PubMed: 21304729 | data sharing [curation] | 2010-12-04 |
| Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010 | [1]Dawn Field, [2]Susanna-Assunta Sansone, [3]Edward F. DeLong, [4]Peter Sterk, [5]Iddo Friedberg, [6]Renzo Kottmann, [7]Lynette Hirschman, [8]George M. Garrity, [9]Guy R. Cochrane, [10]John Wooley, [11]Folker Meyer, [12]Sarah Hunter, [13]Owen White [Full author list] | Standards in genomic sciences [curation] | DOI: 10.4056/SIGS.1383476
PubMed: 21304724 | metadata [curation]; meta-analysis [curation]; metagenomics [curation] | 2010-12-04 |
| A primer on metagenomics | [1]John C Wooley, [2]Adam Godzik, [3]Iddo Friedberg [Full author list] | PLOS Computational Biology [curation] | DOI: 10.1371/JOURNAL.PCBI.1000667
PubMed: 20195499 | metagenomics [curation] | 2010-02-01 |
| Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Special Interest Group at ISMB 2009 | [1]Dawn Field, [2]Iddo Friedberg, [3]Peter Sterk, [4]Renzo Kottmann, [5]Frank Oliver Glöckner, [6]Lynette Hirschman, [7]George M. Garrity, [8]Guy R. Cochrane, [9]John Wooley, [10]Jack A Gilbert [Full author list] | Standards in genomic sciences [curation] | DOI: 10.4056/SIGS.641096
PubMed: 21304668 | metadata [curation]; metagenomics [curation] | 2009-12-29 |
| Biopython: freely available Python tools for computational molecular biology and bioinformatics | [1]Peter J Cock, [2]Tiago Antao, [3]Jeffrey T Chang, [4]Brad Chapman, [5]Cymon John Cox, [6]Andrew Dalke, [7]Iddo Friedberg, [8]Thomas Hamelryck, [9]Frank Kauff, [10]Bartek Wilczynski, [11]Michiel J L de Hoon [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTP163
PubMed: 19304878 | molecular biology [curation]; bioinformatics [curation]; computational biology [curation] | 2009-03-20 |
| Computational protein function prediction: are we making progress? | [1]Adam Godzik, [2]Jambon M, [3]Iddo Friedberg [Full author list] | Cellular and Molecular Life Sciences [curation] | DOI: 10.1007/S00018-007-7211-Y
PubMed: 17611711 | computational biology [curation]; protein function prediction [curation] | 2007-10-01 |
| The 2006 automated function prediction meeting | [1]Ana P C Rodrigues, [2]Ana R Grant, [3]Barry J Grant, [4]Adam Godzik, [5]Iddo Friedberg [Full author list] | BMC Bioinformatics [curation] | DOI: 10.1186/1471-2105-8-S4-S1
PubMed: 17570143 | automation [curation] | 2007-05-22 |
| Identification and characterization of DUSP27, a novel dual-specific protein phosphatase | [1]Ilan Friedberg, [2]Konstantina Nika, [3]Lutz Tautz, [4]Kan Saito, [5]Fabio Cerignoli, [6]Iddo Friedberg, [7]Adam Godzik, [8]Tomas Mustelin [Full author list] | FEBS Letters [curation] | DOI: 10.1016/J.FEBSLET.2007.04.059
PubMed: 17498703 | protein tyrosine/serine/threonine phosphatase activity [curation]; Dual specificity phosphatase 29 [curation]; Dual specificity phosphatase 23 [curation]; Dual specificity phosphatase 15 [curation]; dual specificity phosphatase 1 [curation] | 2007-04-30 |
| Functional differentiation of proteins: implications for structural genomics. | [1]Iddo Friedberg, [2]Adam Godzik [Full author list] | Structure [curation] | DOI: 10.1016/J.STR.2007.02.005
PubMed: 17437713 | genomics [curation] | 2007-04-01 |
| Using an alignment of fragment strings for comparing protein structures. | [1]Iddo Friedberg, [2]Tim Harder, [3]Rachel Kolodny, [4]Einat Sitbon, [5]Zhanwen Li, [6]Adam Godzik [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/BTL310
PubMed: 17237095 | | 2007-01-01 |
| Ten simple rules for selecting a postdoctoral position | [1]Philip Bourne, [2]Iddo Friedberg [Full author list] | PLOS Computational Biology [curation] | DOI: 10.1371/JOURNAL.PCBI.0020121
PubMed: 17121457 | job activity [curation]; salary [curation]; career [curation]; laboratory [curation]; decision making [curation]; postdoctoral research [curation]; research grant [curation] | 2006-11-24 |
| JAFA: a protein function annotation meta-server | [1]Iddo Friedberg, [2]Tim Harder, [3]Adam Godzik [Full author list] | Nucleic Acids Research [curation] | DOI: 10.1093/NAR/GKL045
PubMed: 16845030 | | 2006-07-01 |
| New avenues in protein function prediction | [1]Iddo Friedberg, [2]Martin Jambon, [3]Adam Godzik [Full author list] | Protein Science [curation] | DOI: 10.1110/PS.062158406
PubMed: 16731984 | protein function prediction [curation] | 2006-06-01 |
| Automated protein function prediction--the genomic challenge | [1]Iddo Friedberg [Full author list] | Briefings in Bioinformatics [curation] | DOI: 10.1093/BIB/BBL004
PubMed: 16772267 | automation [curation]; protein function prediction [curation] | 2006-05-23 |
| Correction: Ten Simple Rules for Selecting a Postdoctoral Position | [1]Philip Bourne, [2]Iddo Friedberg [Full author list] | PLOS Computational Biology [curation] | DOI: 10.1371/JOURNAL.PCBI.0020181
| | 2006-01-01 |
| Connecting the protein structure universe by using sparse recurring fragments. | [1]Iddo Friedberg, [2]Adam Godzik [Full author list] | Structure [curation] | DOI: 10.1016/J.STR.2005.05.009
PubMed: 16084393 | | 2005-08-01 |
| Fragnostic: walking through protein structure space | [1]Iddo Friedberg, [2]Adam Godzik [Full author list] | Nucleic Acids Research [curation] | DOI: 10.1093/NAR/GKI363
PubMed: 15980462 | | 2005-07-01 |
| Protein tyrosine phosphatases in the human genome | [1]Andrés Alonso, [2]Joanna Sasin, [3]Nunzio Bottini, [4]Ilan Friedberg, [5]Iddo Friedberg, [6]Andrei Osterman, [7]Adam Godzik, [8]Tony Hunter, [9]Jack E. Dixon, [10]Tomas Mustelin [Full author list] | Cell [curation] | DOI: 10.1016/J.CELL.2004.05.018
PubMed: 15186772 | | 2004-06-11 |
| The interplay of fold recognition and experimental structure determination in structural genomics | [1]Iddo Friedberg, [2]Lukasz Jaroszewski, [3]Yuzhen Ye, [4]Adam Godzik [Full author list] | Current Opinion in Structural Biology [curation] | DOI: 10.1016/J.SBI.2004.04.005
PubMed: 15193310 | genomics [curation] | 2004-06-01 |
| The status of structural genomics defined through the analysis of current targets and structures | [1]Philip Bourne, [2]Allerston CK, [3]Werner G. Krebs, [4]Li W, [5]Ilya Shindyalov, [6]Adam Godzik, [7]Iddo Friedberg, [8]Liu T, [9]Wild D, [10]Hwang S, [11]Ghahramani Z, [12]Chen L, [13]Westbrook J [Full author list] | Pacific Symposium on Biocomputing [curation] | DOI: 10.1142/9789812704856_0036
PubMed: 14992518 | genomics [curation] | 2004-01-01 |
| PeCoP: automatic determination of persistently conserved positions in protein families | [1]Iddo Friedberg, [2]Hanah Margalit [Full author list] | Bioinformatics [curation] | DOI: 10.1093/BIOINFORMATICS/18.9.1276
PubMed: 12217925 | automation [curation] | 2002-09-01 |
| Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function. | [1]Iddo Friedberg, [2]Hanah Margalit [Full author list] | Protein Science [curation] | DOI: 10.1110/PS.18602
PubMed: 11790845 | protein folding [curation] | 2002-02-01 |
| Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments | [1]Iddo Friedberg, [2]Tommy Kaplan, [3]Margalit H [Full author list] | Protein Science [curation] | DOI: 10.1110/PS.9.11.2278
PubMed: 11152139 | | 2000-11-01 |
| Glimmers in the midnight zone: characterization of aligned identical residues in sequence-dissimilar proteins sharing a common fold. | [0]Tommy Kaplan, [1]Iddo Friedberg, [2]T Kaplan, [3]H Margalit [Full author list] | Proceedings. International Conference on Intelligent Systems for Molecular Biology [curation] | PubMed: 10977077 | sequence alignment [curation]; protein folding [curation] | 2000-01-01 |
| Submitochondrial distribution of three key steroidogenic proteins (steroidogenic acute regulatory protein and cytochrome p450scc and 3beta-hydroxysteroid dehydrogenase isomerase enzymes) upon stimulation by intracellular calcium in adrenal glomerulosa cells | [1]Nadia Cherradi, [2]M F Rossier, [3]M B Vallotton, [4]R Timberg, [5]Iddo Friedberg, [6]J Orly, [7]X J Wang, [8]D M Stocco, [9]A M Capponi [Full author list] | Journal of Biological Chemistry [curation] | DOI: 10.1074/JBC.272.12.7899
PubMed: 9065457 | | 1997-03-01 |