| Title | Authors (identified) | Published In | Identifier(s) | Topic | Published Date | Match? |
|---|
| FASSO: An AlphaFold based method to assign functional annotations by combining sequence and structure orthology | [1]Carson M Andorf, [2]Shatabdi Sen, [3]Rita K Hayford, [4]John L Portwood, [5]Ethalinda Cannon, [6]Lisa C Harper, [7]Jack M Gardiner, [8]Taner Z Sen, [9]Margaret Woodhouse [Full author list] | | DOI: 10.1101/2022.11.10.516002 [ORCID]
| | 2022-11-15 | |
| A pan-genomic approach to genome databases using maize as a model system | [1]Margaret R Woodhouse, [2]Ethalinda K Cannon, [3]John L Portwood, [4]Lisa C Harper, [5]Jack M Gardiner, [6]Mary L. Schaeffer, [7]Carson M Andorf [Full author list] | BMC Plant Biology [missing] | DOI: 10.1186/S12870-021-03173-5 [ORCID]
PubMed: 34416864 [ORCID]
| | 2021-08-20 | |
| Physical and Genetic Mapping of Chromosome 9S in Maize Using Mutations With Terminal Deficiencies | [1]Shiaoman Chao, [2]Jack M Gardiner, [3]Susan Melia-Hancock, [4]Edward H Coe [Full author list] | Genetics [missing] | DOI: 10.1093/GENETICS/143.4.1785 [ORCID]
| | 2021-01-13 | |
| MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database | [1]Md Shamimuzzaman, [2]Jack M Gardiner, [3]Amy T Walsh, [4]Deborah A Triant, [5]Justin J Le Tourneau, [6]Aditi Tayal, [7]Deepak R. Unni, [8]Hung N Nguyen, [9]John L Portwood, [10]Ethalinda K S Cannon, [11]Carson M Andorf, [12]Christine G Elsik [Full author list] | Frontiers in Plant Science [missing] | DOI: 10.3389/FPLS.2020.592730 [ORCID]
PubMed: 33193550 [ORCID]
| data mining [missing]; genomics [missing] | 2020-10-22 | |
| BonnMu: a sequence-indexed resource of transposon-induced maize mutations for functional genomics studies | [1]Caroline Marcon, [2]Lena Altrogge, [3]Yan Naing Win, [4]Tyll Stöcker, [5]Jack M Gardiner, [6]John L Portwood, [7]Nina Opitz, [8]Annika Kortz, [9]Jutta Baldauf, [10]Charles T Hunter, [11]Donald R McCarty, [12]Karen E Koch, [13]Heiko Schoof, [14]Frank Hochholdinger [Full author list] | Plant Physiology [missing] | DOI: 10.1104/PP.20.00478 [ORCID]
PubMed: 32769162 [ORCID]
| functional genomics [missing] | 2020-08-07 | |
| MaizeDIG: Maize Database of Images and Genomes | [1]Kyoung Tak Cho, [2]John L Portwood, [3]Jack M Gardiner, [4]Lisa C Harper, [5]Carolyn Lawrence-Dill, [6]Iddo Friedberg, [7]Carson M Andorf [Full author list] | Frontiers in Plant Science [missing] | DOI: 10.3389/FPLS.2019.01050 [ORCID]
PubMed: 31555312 [ORCID]
| | 2019-08-28 | |
| MaizeGDB 2018: the maize multi-genome genetics and genomics database | [1]John L Portwood, [2]Margaret Woodhouse, [3]Ethalinda Cannon, [4]Jack M Gardiner, [5]Lisa C Harper, [6]Mary L. Schaeffer, [7]Jesse R Walsh, [8]Taner Z Sen, [9]Kyoung Tak Cho, [10]David A Schott, ... [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKY1046 [ORCID]
PubMed: 30407532 [ORCID]
| genomics [missing] | 2019-01-01 | |
| Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets | [1]Naser AlKhalifah, [2]Darwin A Campbell, [3]Celeste M Falcon, [4]Jack M Gardiner, [5]Nathan D Miller, [6]Cinta Romay, [7]Ramona L Walls, [8]Renee Walton, [9]Cheng-Ting Yeh, [10]Martin Bohn, ... [Full author list] | BMC Research Notes [missing] | DOI: 10.1186/S13104-018-3508-1 [ORCID]
PubMed: 29986751 [ORCID]
| phenotype [missing]; data set [missing] | 2018-07-09 | |
| The effect of artificial selection on phenotypic plasticity in maize | [1]Joseph L Gage, [2]Diego Jarquin, [3]Cinta Romay, [4]Aaron Lorenz, [5]Edward Buckler, [6]Shawn Kaeppler, [7]Naser Alkhalifah, [8]Martin Bohn, [9]Darwin A Campbell, [10]Jode Edwards, [11]David S. Ertl, [12]Sherry Flint-Garcia, [13]Jack Gardiner, [14]Byron Good, [15]Candice N Hirsch, ... [Full author list] | Nature Communications [missing] | DOI: 10.1038/S41467-017-01450-2 [ORCID]
PubMed: 29116144 [ORCID]
| phenotypic plasticity [missing] | 2017-11-07 | |
| Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation | [1]Taner Z Sen, [2]Bremen L Braun, [3]David A Schott, [4]John L Portwood Ii, [5]Mary L. Schaeffer, [6]Lisa C Harper, [7]Jack M Gardiner, [8]Ethalinda Cannon, [9]Carson M Andorf [Full author list] | Database [missing] | DOI: 10.1093/DATABASE/BAX031 [ORCID]
PubMed: 28605768 [ORCID]
| prioritization [missing] | 2017-01-01 | |
| MaizeGDB: The Maize Genetics and Genomics Database | [1]Lisa Harper, [2]Jack Gardiner, [3]Carson M Andorf, [4]Carolyn J Lawrence [Full author list] | Methods in Molecular Biology [missing] | DOI: 10.1007/978-1-4939-3167-5_9 [ORCID]
PubMed: 26519406 [ORCID]
| genomics [missing]; MaizeGDB [missing] | 2016-01-01 | |
| MaizeGDB update: new tools, data and interface for the maize model organism database | [1]Carson M Andorf, [2]Ethalinda Cannon, [3]John L Portwood, [4]Jack M Gardiner, [5]Lisa C Harper, [6]Mary L. Schaeffer, [7]Bremen L Braun, [8]Darwin A Campbell, [9]Abhinav G Vinnakota, [10]Venktanaga V Sribalusu, [11]Miranda Huerta, [12]Kyoung Tak Cho, [13]Kokulapalan Wimalanathan, [14]Jacqueline D Richter, [15]Emily D Mauch, [16]Bhavani S Rao, [17]Scott M Birkett, [18]Taner Z Sen, [19]Carolyn Lawrence-Dill [Full author list] | Nucleic Acids Research [missing] | DOI: 10.1093/NAR/GKV1007 [ORCID]
PubMed: 26432828 [ORCID]
| model organism [missing]; MaizeGDB [missing] | 2015-10-01 | |
| An ontology approach to comparative phenomics in plants | [1]Anika Oellrich, [2]Ramona L Walls, ..., [3]Ethalinda Ks Cannon, [4]Steven B Cannon, [5]Laurel Cooper, [6]Jack Gardiner, [7]Georgios V. Gkoutos, [8]Lisa Harper, [9]Mingze He, [10]Robert Hoehndorf, ... [Full author list] | Plant Methods [missing] | DOI: 10.1186/S13007-015-0053-Y [ORCID]
PubMed: 25774204 [ORCID]
| ontology [missing] | 2015-02-25 | |
| Maize Metabolic Network Construction and Transcriptome Analysis | [1]Marcela K. Monaco, [2]Taner Z Sen, [3]Palitha D. Dharmawardhana, [4]Liya Ren, [5]Mary L. Schaeffer, [6]Sushma Naithani, [7]Vindhya Amarasinghe, [8]Jim Thomason, [9]Lisa Harper, [10]Jack Gardiner, [11]Ethalinda Cannon, [12]Carolyn J. Lawrence, [13]Doreen Ware, [14]Pankaj Jaiswal [Full author list] | The plant genome [missing] | DOI: 10.3835/PLANTGENOME2012.09.0025 [ORCID]
| metabolic network [missing]; Plant Science [missing] | 2013-03-01 | |
| POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data | [1]Ethalinda K S Cannon, [2]Scott M Birkett, [3]Bremen L Braun, [4]Sateesh Kodavali, [5]Douglas M Jennewein, [6]Alper Yilmaz, [7]Valentin Antonescu, [8]Corina Antonescu, [9]Lisa C Harper, [10]Jack M Gardiner, [11]Mary L. Schaeffer, [12]Darwin A Campbell, ... [Full author list] | International Journal of Plant Genomics [missing] | DOI: 10.1155/2011/923035 [ORCID]
PubMed: 22253616 [ORCID]
| data sharing [missing] | 2011-12-27 | |
| MaizeGDB: curation and outreach go hand-in-hand | [1]Mary L. Schaeffer, [2]Lisa C Harper, [3]Jack M Gardiner, [4]Carson M Andorf, [5]Darwin A Campbell, [6]Ethalinda Cannon, [7]Taner Z Sen, [8]Carolyn J Lawrence [Full author list] | Database [missing] | DOI: 10.1093/DATABASE/BAR022 [ORCID]
PubMed: 21624896 [ORCID]
| MaizeGDB [missing] | 2011-05-29 | |
| The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video | [1]Lisa C Harper, [2]Mary L. Schaeffer, [3]Jordan Thistle, [4]Jack M Gardiner, [5]Carson M Andorf, [6]Darwin A Campbell, [7]Ethalinda K S Cannon, [8]Bremen L Braun, [9]Scott M Birkett, [10]Carolyn J Lawrence, [11]Taner Z Sen [Full author list] | Database [missing] | DOI: 10.1093/DATABASE/BAR016 [ORCID]
PubMed: 21565781 [ORCID]
| web browser [missing]; MaizeGDB [missing] | 2011-05-09 | |
| MaizeGDB , maize genetics cooperation and the ~2500MB B73 genome generated tsunami | [1]Mary L. Schaeffer, [2]Jack Gardiner, [3]Elisabeth Harper, [4]Carson M Andorf, [5]Darwin A Campbell, [6]Ethalinda Cannon, [7]Taner Sen, [8]Carolyn Lawrence [Full author list] | Nature Precedings [missing] | DOI: 10.1038/NPRE.2010.5258.1 [ORCID]
| cooperation [missing] | 2010-11-15 | |
| MaizeGDB , maize genetics cooperation and the ~2500MB B73 genome generated tsunami | [1]Mary L. Schaeffer, [2]Jack Gardiner, [3]Elisabeth Harper, [4]Carson M Andorf, [5]Darwin A Campbell, [6]Ethalinda Cannon, [7]Taner Sen, [8]Carolyn Lawrence [Full author list] | Nature Precedings [missing] | DOI: 10.1038/NPRE.2010.5258 [ORCID]
| cooperation [missing] | 2010-11-15 | |
| Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis | [1]Robert M. Stupar, [2]Jack M Gardiner, [3]Aaron G Oldre, [4]William J Haun, [5]Vicki L Chandler, [6]Nathan M Springer [Full author list] | BMC Plant Biology [missing] | DOI: 10.1186/1471-2229-8-33 [ORCID]
PubMed: 18402703 [ORCID]
| heterosis [missing] | 2008-04-10 | |
| Physical and genetic structure of the maize genome reflects its complex evolutionary history | [1]Fusheng Wei, [2]Ed Coe, [3]William Nelson, [4]Arvind K Bharti, [5]Fred Engler, [6]Ed Butler, [7]HyeRan Kim, [8]Jose Luis Goicoechea, [9]Mingsheng Chen, [10]Seunghee Lee, ..., [18]Andrew H Paterson, [19]Mary L. Schaeffer, [20]Jack Gardiner, [21]Karen Cone, [22]Joachim Messing, ... [Full author list] | PLOS Genetics [missing] | DOI: 10.1371/JOURNAL.PGEN.0030123 [ORCID]
PubMed: 17658954 [ORCID]
| | 2007-07-01 | |
| A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps | [1]Young-Sun Yim, [2]Patricia Moak, [3]Hector Sanchez-Villeda, [4]Theresa A Musket, [5]Pamela Close, [6]Patricia E Klein, [7]John E Mullet, [8]Michael D McMullen, [9]Zheiwei Fang, [10]Mary L. Schaeffer, [11]Jack M Gardiner, [12]Edward H Coe, [13]Georgia L Davis [Full author list] | BMC Genomics [missing] | DOI: 10.1186/1471-2164-8-47 [ORCID]
PubMed: 17291341 [ORCID]
| | 2007-02-09 | |
| Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization | [1]Jack Gardiner, [2]Steven Schroeder, [3]Mary L Polacco, [4]Hector Sanchez-Villeda, [5]Zhiwei Fang, [6]Michele Morgante, [7]Tim Landewe, [8]Kevin Fengler, [9]Francisco Useche, [10]Michael Hanafey, [11]Scott Tingey, [12]Hugh Chou, [13]Rod A. Wing, [14]Carol Soderlund, [15]Edward H Coe [Full author list] | Plant Physiology [missing] | DOI: 10.1104/PP.103.034538 [ORCID]
PubMed: 15020742 [ORCID]
| | 2004-03-12 | |
| Genetic, physical, and informatics resources for maize. On the road to an integrated map | [1]Karen C Cone, [2]Michael D McMullen, [3]Irie Vroh Bi, [4]Georgia L Davis, [5]Young-Sun Yim, [6]Jack M Gardiner, [7]Mary L Polacco, [8]Hector Sanchez-Villeda, [9]Zhiwei Fang, [10]Steven G Schroeder, [11]Seth A Havermann, [12]John E Bowers, [13]Andrew H Paterson, [14]Carol A Soderlund, [15]Fred W Engler, [16]Rod A. Wing, [17]Edward H Coe [Full author list] | Plant Physiology [missing] | DOI: 10.1104/PP.012245 [ORCID]
PubMed: 12481043 [ORCID]
| informatics [missing] | 2002-12-01 | |
| Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization | [1]Young-Sun Yim, [2]Georgia L Davis, [3]Ngozi A Duru, [4]Theresa A Musket, [5]Eric W Linton, [6]Joachim Messing, [7]Michael D McMullen, [8]Carol A Soderlund, [9]Mary L Polacco, [10]Jack M Gardiner, [11]Edward H Coe [Full author list] | Plant Physiology [missing] | DOI: 10.1104/PP.013474 [ORCID]
PubMed: 12481051 [ORCID]
| | 2002-12-01 | |
| Development and mapping of SSR markers for maize | [1]Natalya Sharopova, [2]Michael D McMullen, [3]Linda Schultz, [4]Steven G Schroeder, [5]Hector Sanchez-Villeda, [6]Jack Gardiner, [7]Dean Bergstrom, [8]Katherine Houchins, [9]Susan Melia-Hancock, [10]Theresa Musket, ... [Full author list] | Plant Molecular Biology [missing] | DOI: 10.1023/A:1014868625533 [ORCID]
PubMed: 12004892 [ORCID]
| | 2002-03-01 | |
| Access to the maize genome: an integrated physical and genetic map | [1]Edward Coe, [2]Karen Cone, [3]Michael McMullen, [4]Su-Shing Chen, [5]Georgia Davis, [6]Jack Gardiner, [7]Emmanuel Liscum, [8]Mary Polacco, [9]Andrew Paterson, [10]Hector Sanchez-Villeda, [11]Cari Soderlund, [12]Rod Wing [Full author list] | Plant Physiology [missing] | DOI: 10.1104/PP.128.1.9 [ORCID]
PubMed: 11788746 [ORCID]
| | 2002-01-01 | |