Temporary Disabled. :) please Go back MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities - Wikidata www.fgks.org » Address: [go: up one dir, main page] Include Form Remove Scripts Accept Cookies Show Images Show Referer Rotate13 Base64 Strip Meta Strip Title Session Cookies MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities (Q90821363) From Wikidata Jump to navigation Jump to search scientific article published on 16 October 2019 edit Language Label Description Also known as English MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities scientific article published on 16 October 2019 Statements instance of scholarly article 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 title MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities (English) 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 main subject natural product 1 reference based on heuristic inferred from title author Iddo Friedberg series ordinal 21 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 William H. Gerwick series ordinal 24 object named as William H Gerwick 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Pieter C. Dorrestein series ordinal 26 object named as Pieter C Dorrestein 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Jon G. Sanders series ordinal 13 object named as Jon G Sanders 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Louis-FĂ©lix Nothias series ordinal 11 object named as Louis Felix Nothias 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Kasthuri Venkateswaran series ordinal 23 object named as Kasthuri Venkateswaran 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Rob Knight series ordinal 22 object named as Rob Knight 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Amina Bouslimani series ordinal 10 object named as Amina Bouslimani 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Evgenia Glukhov series ordinal 6 object named as Evgenia Glukhov 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Fernando Vargas series ordinal 8 object named as Fernando Vargas 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 James T Morton series ordinal 17 object named as James T Morton 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Hosein Mohimani series ordinal 28 object named as Hosein Mohimani 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Pavel A. Pevzner series ordinal 27 object named as Pavel A Pevzner 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Alexey A. Gurevich series ordinal 2 object named as Alexey Gurevich 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Luke R Thompson series ordinal 15 object named as Luke R Thompson 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Alex Shlemov series ordinal 19 object named as Alexander Shlemov 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Tal Luzzatto-Knaan series ordinal 7 object named as Tal Luzzatto-Knaan 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Lena Gerwick series ordinal 25 object named as Lena Gerwick 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Alla Mikheenko series ordinal 18 object named as Alla Mikheenko 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Kelsey L Alexander series ordinal 3 object named as Kelsey L Alexander 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Tiago LeĂŁo series ordinal 5 object named as Tiago LeĂŁo 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 author name string Liu Cao series ordinal 1 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 C Benjamin Naman series ordinal 4 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Robby Quinn series ordinal 9 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Nitin K Singh series ordinal 12 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Rodolfo A S Benitez series ordinal 14 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Md-Nafiz Hamid series ordinal 16 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Anton Korobeynikov series ordinal 20 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 publication date 16 October 2019 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 published in Cell Systems 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 volume 9 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 issue 6 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 page(s) 600-608.e4 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 describes a project that uses Microbial Tracking Payload Series object has role International Space Station experiment 1 reference reference URL https://www.nasa.gov/mission_pages/station/research/experiments/explorer/Investigation.html?#id=1569 cites work Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking 1 reference stated in COCI retrieved 30 November 2021 reference URL https://opencitations.net/index/coci/api/v1/citations/10.1038/NBT.3597 Mass spectral molecular networking of living microbial colonies 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Automated genome mining of ribosomal peptide natural products 0 references The genomisotopic approach: a systematic method to isolate products of orphan biosynthetic gene clusters 0 references Structure, function and diversity of the healthy human microbiome 0 references A roadmap for natural product discovery based on large-scale genomics and metabolomics 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Minimum Information about a Biosynthetic Gene cluster. 0 references Molecular cartography of the human skin surface in 3D 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 A chemocentric view of the natural product inventory 0 references Drug discovery and natural products: end of an era or an endless frontier? 0 references Pep2Path: automated mass spectrometry-guided genome mining of peptidic natural products 0 references A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics. 0 references The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature 0 references Dereplication of microbial metabolites through database search of mass spectra 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/citations/10.1038/S41467-018-06082-8 Structural Characterization and Bioactivity Analysis of the Two-Component Lantibiotic Flv System from a Ruminant Bacterium 0 references A framework for human microbiome research 0 references Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 HUMAN MICROBIOTA. Small molecules from the human microbiota 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 The Earth Microbiome project: successes and aspirations 0 references A communal catalogue reveals Earth's multiscale microbial diversity 0 references Using fragmentation trees and mass spectral trees for identifying unknown compounds in metabolomics 0 references A new approach to evaluating statistical significance of spectral identifications 0 references Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Characterization of the lacticin 481 operon: the Lactococcus lactis genes lctF, lctE, and lctG encode a putative ABC transporter involved in bacteriocin immunity. 0 references Accelerated Profile HMM Searches 0 references Strains, functions and dynamics in the expanded Human Microbiome Project 0 references A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins 0 references Computational approaches to natural product discovery 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Dereplication of peptidic natural products through database search of mass spectra 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Draft Genome Sequences of Two Aspergillus fumigatus Strains, Isolated from the International Space Station. 0 references Mutation-tolerant protein identification by mass spectrometry 0 references Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species 0 references antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences 0 references An environmental bacterial taxon with a large and distinct metabolic repertoire 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5 0 references Antibiotics for emerging pathogens 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Efficiency of database search for identification of mutated and modified proteins via mass spectrometry 0 references Improved lanthipeptide detection and prediction for antiSMASH 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication 0 references A new antibiotic kills pathogens without detectable resistance 1 reference stated in COCI retrieved 3 May 2022 reference URL https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELS.2019.09.004 Wewakazole B, a Cytotoxic Cyanobactin from the Cyanobacterium Moorea producens Collected in the Red Sea. 0 references Protein identification by spectral networks analysis 0 references Assembling single-cell genomes and mini-metagenomes from chimeric MDA products 0 references Wewakazole, a novel cyclic dodecapeptide from a Papua New Guinea Lyngbya majuscula 0 references Metagenome mining reveals polytheonamides as posttranslationally modified ribosomal peptides 0 references antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters 0 references metaSPAdes: a new versatile metagenomic assembler 0 references MS/MS networking guided analysis of molecule and gene cluster families. 0 references Coelichelin, a new peptide siderophore encoded by the Streptomyces coelicolor genome: structure prediction from the sequence of its non-ribosomal peptide synthetase 0 references Follow the leader: the use of leader peptides to guide natural product biosynthesis. 0 references A mass spectrometry-guided genome mining approach for natural product peptidogenomics 0 references Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks 2 references stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/citations/10.1039/C5NP00050E stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 American Gut: an Open Platform for Citizen Science Microbiome Research 2 references stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/citations/10.1128/MSYSTEMS.00031-18 stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 Digitizing mass spectrometry data to explore the chemical diversity and distribution of marine cyanobacteria and algae 1 reference stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 Identification of post-translational modifications via blind search of mass-spectra 1 reference stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing 1 reference stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station. 1 reference stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 The re-emergence of natural products for drug discovery in the genomics era. 1 reference stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra. 2 references stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/citations/10.1038/S41564-017-0094-2 Discovery of a new peptide natural product by Streptomyces coelicolor genome mining 1 reference stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM) 1 reference stated in COCI retrieved 5 May 2024 reference URL https://opencitations.net/index/api/v1/references/10.1016/J.CELS.2019.09.004 Identifiers DOI 10.1016/J.CELS.2019.09.004 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 PubMed publication ID 31629686 1 reference stated in Europe PubMed Central PubMed publication ID 31629686 reference URL https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31629686%20AND%20SRC:MED&resulttype=core&format=json retrieved 16 April 2020 Sitelinks 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