[PDF][PDF] High-Throughput computational methods in sequencing and immuno-oncology: Identifying immunogenic mutations and T-cell receptor repertoire dynamics
IA Sivakumar - 2020 - jscholarship.library.jhu.edu
… Combining these notions, I attempt to determine whether cancer falls on such a spectrum
and the magnitude and trajectory of ICI responders vs. non-responders. In this paradigm, I …
and the magnitude and trajectory of ICI responders vs. non-responders. In this paradigm, I …
[HTML][HTML] Computational methods for analyzing RNA-sequencing contaminated samples and its impact on cancer genome studies
Z Mortezaei - Informatics in Medicine Unlocked, 2022 - Elsevier
… using the sequencing approach, we can refer to determining … Since mRNA extraction/isolation
is usually done by capturing the … In high-throughput RNA-Seq, one of the challenges is the …
is usually done by capturing the … In high-throughput RNA-Seq, one of the challenges is the …
Sequence-based platforms for discovering biomarkers in liquid biopsy of non-small-cell lung cancer
… due to advances in high-throughput sequencing technologies and … and methods of isolation.
We discuss next-generation … are then sequenced in parallel and computationally aligned …
We discuss next-generation … are then sequenced in parallel and computationally aligned …
[HTML][HTML] Experimental and bioinformatics considerations in cancer application of single cell genomics
JHJ Tan, SL Kong, JA Tai, HM Poh, F Yao… - Computational and …, 2021 - Elsevier
… device for single cell isolation and DNA release[13]. … -based high throughput single cell
genome sequencing devices … cell whole exome sequencing is able to identify the clonal nature of …
genome sequencing devices … cell whole exome sequencing is able to identify the clonal nature of …
An overview on single-cell technology for hepatocellular carcinoma diagnosis
… sc-RNA-seq was first introduced in 2009 by Tang et al. Earlier… of isolated single cells from
HCC tumor cells and para-tumor … stem cell-related markers using high throughput RNA-seq …
HCC tumor cells and para-tumor … stem cell-related markers using high throughput RNA-seq …
Precision Medicine in Breast Cancer: A Molecular Genomics and Diagnostics Approach
H Dalal - 2024 - portal.research.lu.se
… HER2/ERBB2 DNA copy number quantification and HER2-low … strategies using large scale
analyses of breast cancer … as a potential predictive biomarker to identify which patients will …
analyses of breast cancer … as a potential predictive biomarker to identify which patients will …
A primer on the analysis of high-throughput sequencing data for detection of plant viruses
… , is one of the main challenges identified for the adoption of … use of online bioinformatics
platforms and cloud computing … (for example, one or several isolates of every virus known to …
platforms and cloud computing … (for example, one or several isolates of every virus known to …
Integrating single-cell genomics pipelines to discover mechanisms of stem cell differentiation
… Emerging next-generation computational strategies harness growing data consortia to
deduce regulatory factors controlling differentiation, intercellular communication, and lineage …
deduce regulatory factors controlling differentiation, intercellular communication, and lineage …
RNA sequencing: new technologies and applications in cancer research
M Hong, S Tao, L Zhang, LT Diao, X Huang… - Journal of hematology & …, 2020 - Springer
… Single-cell RNA sequencing was first published in 2009 to profile … (LCM), which can isolate
individual cells [24]. In situ … to the popularity of high-throughput sequencing technology [59]. …
individual cells [24]. In situ … to the popularity of high-throughput sequencing technology [59]. …
A Survey on Evolutionary Computation for Identifying Biomarkers of Complex Disease
… (eg, cancer). With the advancement of high-throughput sequencing technology, there has …
zero; the latter is employed to selectively remove isolated genes, and it can get multi-modal …
zero; the latter is employed to selectively remove isolated genes, and it can get multi-modal …