Ultrafine mapping of chromosome conformation at hundred basepair resolution reveals regulatory genome architecture
The resolution limit of chromatin conformation capture methodologies (3Cs) has restrained
their application in detection of fine-level chromatin structure mediated by cis-regulatory …
their application in detection of fine-level chromatin structure mediated by cis-regulatory …
[PDF][PDF] Tri-4C: efficient identification of cis-regulatory loops at hundred base pair resolution
Y Zhu, Y Suh, Y Zhu, Y Suh - bioRxiv, 2019 - scholar.archive.org
Here we present Tri-4C, a targeted chromatin conformation capture method for ultrafine
mapping of chromatin interactions. Tri-4C quantitatively reveals cis-regulatory loops with …
mapping of chromatin interactions. Tri-4C quantitatively reveals cis-regulatory loops with …
iHi-C 2.0: A simple approach for mapping native spatial chromatin organisation from low cell numbers
A Mizi, EG Gusmao, A Papantonis - Methods, 2020 - Elsevier
Genome organization is now understood to be tightly linked to all genomic functions. Thus,
the high-resolution mapping of higher-order chromosomal structures via 3C-based …
the high-resolution mapping of higher-order chromosomal structures via 3C-based …
Deciphering histone mark-specific fine-scale chromatin organization at high resolution with Micro-C-ChIP
M Metelova, N Krietenstein - BioRxiv, 2023 - biorxiv.org
The regulation of cell-type-specific transcription programs is a highly controlled and complex
process that needs to be fully understood. The gene regulation is often influenced by distal …
process that needs to be fully understood. The gene regulation is often influenced by distal …
The macro and micro of chromosome conformation capture
The 3D organization of the genome facilitates gene regulation, replication, and repair,
making it a key feature of genomic function and one that remains to be properly understood …
making it a key feature of genomic function and one that remains to be properly understood …
Determining chromatin architecture with Micro Capture-C
Abstract Micro Capture-C (MCC) is a chromatin conformation capture (3C) method for
visualizing reproducible three-dimensional contacts of specified regions of the genome at …
visualizing reproducible three-dimensional contacts of specified regions of the genome at …
Assessment of 3D interactions between promoters and distal regulatory elements with promoter Capture Hi-C (PCHi-C)
N Karasu, T Sexton - Enhancers and Promoters: Methods and Protocols, 2021 - Springer
Chromosome conformation capture and its variants interrogate population-average
chromatin structure at a higher resolution and throughput than microscopic methods …
chromatin structure at a higher resolution and throughput than microscopic methods …
High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale
DJ Downes, RA Beagrie, ME Gosden… - Nature …, 2021 - nature.com
Chromosome conformation capture (3C) provides an adaptable tool for studying diverse
biological questions. Current 3C methods generally provide either low-resolution interaction …
biological questions. Current 3C methods generally provide either low-resolution interaction …
Deciphering multi-way interactions in the human genome
Chromatin architecture, a key regulator of gene expression, can be inferred using chromatin
contact data from chromosome conformation capture, or Hi-C. However, classical Hi-C does …
contact data from chromosome conformation capture, or Hi-C. However, classical Hi-C does …
Restriction enzyme selection dictates detection range sensitivity in chromatin conformation capture-based variant-to-gene mapping approaches
Promoter-focused chromatin conformation techniques directly detect interactions between
gene promoters and distal genomic sequences, providing structural information relevant to …
gene promoters and distal genomic sequences, providing structural information relevant to …