Here are
287 public repositories
matching this topic...
Standardized data set for machine learning of protein structure
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Updated
Nov 18, 2020
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Python
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
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Jul 23, 2024
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Python
Diffusion models of protein structure; trigonometry and attention are all you need!
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Dec 12, 2023
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Jupyter Notebook
EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
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Mar 27, 2023
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Python
A Python API for the RCSB Protein Data Bank (PDB)
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Jul 19, 2024
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Python
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
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Jun 29, 2024
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Groovy
EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
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Sep 22, 2023
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Roff
MoleculeKit: Your favorite molecule manipulation kit
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Jul 17, 2024
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Python
A PyTorch framework for prediction of tertiary protein structure
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Jun 8, 2021
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Python
Application to assign secondary structure to proteins
sensitive and precise assembly of short sequencing reads
Bio4j abstract model and general entry point to the project
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Updated
Dec 16, 2016
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Java
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
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Jan 8, 2023
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Python
Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
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Sep 8, 2021
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Python
Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023
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Jun 5, 2024
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Python
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
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Dec 7, 2023
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Python
A collection of resources for Deep Learning in Python for Life Sciences (with focus on biotech and pharma).
R client for the OmniPath web service
Official repo of the modular BioExcel version of HADDOCK
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Jul 24, 2024
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Python
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Jul 22, 2024
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Python
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