A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology (Q21147058)

11 July 2022

Nicolas Le Novère

Nicolas

Le Novère

1 reference

11 July 2022

Nils Blüthgen

Nils

Blüthgen

1 reference

11 July 2022

Pedro Mendes

Pedro

Mendes

1 reference

11 July 2022

Douglas B Kell

Douglas B

Kell

1 reference

11 July 2022

Hans V Westerhoff

Hans V

Westerhoff

1 reference

11 July 2022

Edda Klipp

Edda

Klipp

1 reference

11 July 2022

Ana Paula Oliveira

Ana Paula

Oliveira

1 reference

11 July 2022

Peter Li

Peter

1 reference

11 July 2022

Evangelos Simeonidis

Evangelos

Simeonidis

1 reference

11 July 2022

Kieran Smallbone

Kieran

Smallbone

1 reference

11 July 2022

Dina Petranovic

Dina

Petranovic

1 reference

11 July 2022

Wolfram Liebermeister

object named as

Wolfram Liebermeister

Wolfram

Liebermeister

1 reference

11 July 2022

Matthias Heinemann

Matthias

Heinemann

1 reference

11 July 2022

Warwick B Dunn

Warwick B

Dunn

1 reference

11 July 2022

Michael Hucka

Michael

Hucka

1 reference

11 July 2022

Merja Penttilä

Merja

Penttilä

1 reference

11 July 2022

Neil Swainston

Neil

Swainston

1 reference

11 July 2022

Bernhard Ø Palsson

Bernhard Ø

Palsson

1 reference

11 July 2022

Uwe Sauer

Uwe

Sauer

1 reference

11 July 2022

Irena Spasić

Irena

Spasić

1 reference

11 July 2022

Dieter

Weichart

Dieter Weichart

1 reference

11 July 2022

Mikko Arvas

Mikko

Arvas

1 reference

8 February 2024

Markus J Herrgård

Markus J

Herrgård

1 reference

11 July 2022

Paul Dobson

Paul

Dobson

1 reference

11 July 2022

K Yalçin Arga

K Yalçin

Arga

1 reference

11 July 2022

Simon Borger

Simon

Borger

1 reference

11 July 2022

Roeland Costenoble

Roeland

Costenoble

1 reference

11 July 2022

Monica L Mo

Monica L

1 reference

11 July 2022

Stephen Pettifer

Stephen

Pettifer

1 reference

11 July 2022

Roger Brent

Roger

Brent

1 reference

11 July 2022

David S Broomhead

David S

Broomhead

1 reference

11 July 2022

Betül Kirdar

Betül

Kirdar

1 reference

11 July 2022

Stephen G Oliver

Stephen G

Oliver

1 reference

Global reconstruction of the human metabolic network based on genomic and bibliomic data

11 July 2022

language of work or name

English

0 references

publication date

October 2008

0 references

0 references

0 references

0 references

1155-60

0 references

cites work

1 reference

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19 March 2017

1 reference

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19 March 2017

1 reference

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19 March 2017

1 reference

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19 March 2017

1 reference

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From genomics to chemical genomics: new developments in KEGG

19 March 2017

1 reference

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Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast

19 March 2017

1 reference

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The European Bioinformatics Institute's data resources: towards systems biology

19 March 2017

1 reference

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19 March 2017

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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

19 March 2017

1 reference

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Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

19 March 2017

1 reference

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Gene ontology: tool for the unification of biology

19 March 2017

1 reference

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Growth control of the eukaryote cell: a systems biology study in yeast

19 March 2017

1 reference

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Network biology: understanding the cell's functional organization

19 March 2017

1 reference

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Functional profiling of the Saccharomyces cerevisiae genome

19 March 2017

1 reference

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Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

19 March 2017

1 reference

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19 March 2017

1 reference

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Functional discovery via a compendium of expression profiles

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Minimum information requested in the annotation of biochemical models (MIRIAM)

19 March 2017

1 reference

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Enhancement of the chemical semantic web through the use of InChI identifiers

19 March 2017

1 reference

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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Global analysis of protein activities using proteome chips

19 March 2017

1 reference

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A perspective of publicly accessible/open-access chemistry databases

19 March 2017

1 reference

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Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data

19 March 2017

1 reference

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The universal protein resource (UniProt)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

COPASI--a COmplex PAthway SImulator

7 April 2017

1 reference

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The Montagues and the Capulets

7 April 2017

1 reference

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Internet-based tools for communication and collaboration in chemistry

12 September 2017

1 reference

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Facilitating the development of controlled vocabularies for metabolomics technologies with text mining

12 September 2017

1 reference

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Using a logical model to predict the growth of yeast

12 September 2017

1 reference

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LibSBML: an API library for SBML.

12 September 2017

1 reference

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Automated manipulation of systems biology models using libSBML within Taverna workflows

12 September 2017

1 reference

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The Edinburgh human metabolic network reconstruction and its functional analysis

12 September 2017

1 reference

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Expanded protein information at SGD: new pages and proteome browser.

12 September 2017

1 reference

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Systems biology, metabolic modelling and metabolomics in drug discovery and development

12 September 2017

1 reference

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Text mining and its potential applications in systems biology

12 September 2017

1 reference

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Integration of metabolome data with metabolic networks reveals reporter reactions

12 September 2017

1 reference

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Yeast-based functional genomics and proteomics technologies: the first 15 years and beyond.

12 September 2017

1 reference

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GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Metabolic functions of duplicate genes in Saccharomyces cerevisiae

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Yeast as a model for medical and medicinal research

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

An improved tetO promoter replacement system for regulating the expression of yeast genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Challenges to be faced in the reconstruction of metabolic networks from public databases.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Theodor Bücher Lecture. Metabolomics, modelling and machine learning in systems biology - towards an understanding of the languages of cells. Delivered on 3 July 2005 at the 30th FEBS Congress and the 9th IUBMB conference in Budapest.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Conservation analysis of large biochemical networks

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

The small world inside large metabolic networks.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018421

Two-dimensional annotation of genomes

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/18846089

12 December 2020

inferred from PubMed ID database lookup

A network approach to the systematic analysis of yeast gene function

1 reference

https://pubmed.ncbi.nlm.nih.gov/18846089

12 December 2020

inferred from PubMed ID database lookup

SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT1492

7 January 2021

inferred from DOI database lookup

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT1492

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NBT1492

1 reference

Dimensions Publication ID

1029143382

0 references

Fatcat ID

release_achalwu2vjhcbkgz6fj7u6zvxy

0 references

1 reference

1 reference

1 reference