DISEASES OF AQUATIC ORGANISMS
Dis Aquat Org
Vol. 71: 141–148, 2006
Published July 25
Techniques for detecting chytridiomycosis in wild
frogs: comparing histology with real-time
Taqman PCR
Kerry M. Kriger 1,*, Harry B. Hines 2, Alex D. Hyatt 3, Donna G. Boyle3,
Jean-Marc Hero1
1
Griffith University, School of Environmental and Applied Sciences, PMB 50 Gold Coast Mail Centre,
Queensland 9726, Australia
2
Queensland Parks and Wildlife Service, PO Box 64, Bellbowrie, Queensland 4070, Australia
3
Australian Animal Health Laboratory, CSIRO Livestock Industries, Private Bag 24, Geelong, Victoria 3220, Australia
ABSTRACT: Chytridiomycosis is a lethal disease of amphibians associated with mass mortalities and
population declines worldwide. An accurate, non-invasive technique for detecting chytridiomycosis
is urgently needed to determine the current geographical distribution of the disease, and its prevalence in wild amphibian populations. Herein we evaluate a recently devised, rapid, non-invasive,
swab-PCR assay. We sampled 101 wild juvenile Mixophyes iteratus by both a skin swab for use in
PCR analysis, and a toe-clip for examination by histological methods. The swab-PCR assay detected
chytridiomycosis infection in a minimum of 14.9% of frogs, whereas histology detected infection in no
more than 6.9% of frogs. We conclude that the swab-PCR technique is the more reliable means of
detecting chytridiomycosis in wild amphibians, and that it precludes the need for toe-clipping as a
means of sampling for the presence of the disease in future surveys. Further, we document a significant negative relationship between a juvenile frog’s snout-vent length and its likelihood of being
infected with the disease.
KEY WORDS: Batrachochytrium dendrobatidis · Amphibian declines · Chytridiomycosis · Diagnosis ·
Real-time Taqman PCR assay · Chytrid
Resale or republication not permitted without written consent of the publisher
Chytridiomycosis is a lethal disease of amphibians associated with mass mortalities and population declines
worldwide (Berger et al. 1998, Lips 1999, Bosch et al.
2001, Green et al. 2002, Ron et al. 2003, Weldon & du
Preez 2004). This emerging infectious disease is caused
by Batrachochytrium dendrobatidis, a recently identified chytrid fungus (Berger et al. 1998) that infects the
keratinized cells of the amphibian epidermis (Longcore
et al. 1999). Due to the low degree of genetic variability
among strains collected on different continents (Morehouse et al. 2003) and its identification in the international amphibian pet trade (Aplin & Kirkpatrick 1999),
laboratory trade (Reed et al. 2000, Parker et al. 2002),
food trade (Mazzoni et al. 2003) and zoo trade (Pessier
et al. 1999), the fungus is thought to have been disseminated throughout the world in recent decades by anthropogenic means (Cunningham et al. 2003). B. dendrobatidis has been detected in over 200 amphibian
species from 14 families and 2 orders (Anura and
Caudata) (Speare & Berger 2004, updated with recently
published accounts), and as it has an extremely wide
host range, is likely to be found in more species as
searching continues.
Knowledge of the prevalence of chytridiomycosis in
wild amphibian populations is required for the proper
design of disease monitoring protocols (DiGiacomo
& Koepsell 1986), the successful implementation of
captive-breeding and re-introduction programs (Vig-
*Email: kerry@savethefrogs.com
© Inter-Research 2006 · www.int-res.com
INTRODUCTION
142
Dis Aquat Org 71: 141–148, 2006
gers et al. 1993), and the determination of differential
effects the pathogen may have on various amphibian
populations. However, disease surveys to date have
been severely limited by the shortcomings of available
diagnostic techniques, which until very recently have
been: (1) insensitive, yielding many false-negatives
(Berger et al. 2002, Boyle et al. 2004); (2) non-specific,
leaving open the possibility for false-positives and observer bias; (3) invasive, requiring a skin sample such
as webbing (Weldon et al. 2004) or toes (Berger et al.
2002, Lips et al. 2003, Boyle et al. 2004); and (4) timeconsuming. While it has been suggested that chytridiomycosis in severely infected postmetamorphic individuals can be easily diagnosed by the presence of
abnormal epidermal sloughing, reddening of the ventral surfaces, and behavioral changes such as lethargy
and loss of righting reflex (Berger et al. 1999a), animals
at these later stages of infection are rarely found in the
wild, due both to the short time span over which they
are likely to survive, and the high rate at which they are
scavenged (Green et al. 2002). Testing of wild amphibians is therefore dependent upon laboratory analysis of
samples taken from apparently healthy individuals that
do not exhibit clinical signs of disease.
Diagnosis of chytridiomycosis to date has relied
largely on histological examination of skin tissue
stained with haemotoxylin & eosin (H&E) (Berger et al.
1998, 1999b, Aplin & Kirkpatrick 2000, Waldman 2001,
Bonaccorso et al. 2003, Hopkins & Channing 2003,
Fig. 1. Sampling for Batrachochytrium dendrobatidis: a cotton
swab is firmly run over the skin of Litoria wilcoxii (Photo:
D. Hall)
McDonald et al. 2005). Sensitivity and specificity of this
technique has been improved slightly by the use of
polyclonal antibodies and immunoperoxidase (IPX)
staining (Berger et al. 2002), but even this method may
fail to detect a large proportion of infected animals
(Boyle et al. 2004). More recently, a co-localisation
technique (Olsen et al. 2004) has been designed to
stain both Batrachochytrium dendrobatidis and the
keratinized epidermis that the fungus infects, but no
experiments have been undertaken to quantify the
sensitivity of this technique.
The recent development of a real-time Taqman PCR
assay (Boyle et al. 2004) allows for the rapid, quantitative detection of Batrachochytrium dendrobatidis zoospores recovered from toe-clips of infected animals.
This assay has been shown to greatly improve both the
sensitivity and the specificity of chytridiomycosis diagnosis. Boyle et al. (2004) demonstrated that the Taqman PCR assay could detect chytrid zoospores on
newly infected individuals 7 to 14 d prior to histological
methods, and was nearly twice as likely as histological
methods to detect the fungus.
The toe-clip PCR technique (Boyle et al. 2004),
however, is not without problems: a toe-clip is required,
which in light of new evidence relating toe-clipping
to decreased survivorship (McCarthy & Parris 2004),
raises ethical concerns and may also result in difficulties
acquiring animal ethics permits; furthermore, the analysis of a single toe may not be sufficient for the detection
of the fungus, which does not necessarily infect every toe
(Boyle et al. 2004). To overcome these issues, a noninvasive sampling technique has been developed in
which a cotton swab is firmly run over the skin of the
amphibian (Fig. 1). As chytridiomycosis is a cutaneous
infection, the swab removes sloughing skin which may
contain chytrid zoosporangia and zoospores, and the
swab then replaces the toe-clip in the real-time Taqman
PCR assay. A. D. Hyatt & D. G. Boyle (unpubl. data)
confirm that in experimentally infected individuals, the
swab-PCR technique is at least as sensitive as the
toe-clip PCR technique described by Boyle et al. (2004).
However, the efficacy of the swab technique on
wild-caught animals has never been evaluated, and
thus it is unknown if it is acceptable for use in field
situations. Wild amphibians are likely not exposed for
long periods of time to the high number of zoospores
(103 to 107) used to infect animals in laboratory trials
(Berger et al. 1998, 2002, Lamirande & Nichols 2002,
Boyle et al. 2004, Daszak et al. 2004, Parris 2004,
Rachowicz & Vredenburg 2004), and are thus likely to
carry relatively light infections. Furthermore, swabs
taken off wild individuals are likely to be covered in
dirt and microorganisms, and subject to the high heat
and humidity of field conditions, which may degrade
the fungal DNA, resulting in false-negatives.
Kriger et al.: Detecting chytridiomycosis in wild frogs
The aim of our study was to compare the sensitivity
of the swab-PCR technique with that of the toe-clip
histology technique, in a field situation. The toe-clip
histology technique (Berger et al. 1999b) has been the
most commonly used method of diagnosis in past field
surveys for chytridiomycosis, and thus a comparison of
the 2 techniques would allow for an assessment of the
accuracy of past surveys: high numbers of false-negatives (as determined by negative histology results from
frogs that yielded positive PCR results) would imply
an underestimation of chytridiomycosis prevalence in
past surveys that have used histological examination
of toe-clips. Furthermore, demonstrating a significant
improvement in sensitivity over the histological technique would validate the swab-PCR technique as not
only an acceptable method of sampling wild amphibians for chytridiomycosis, but also as the preferred
method.
MATERIALS AND METHODS
Study population. We sampled wild Mixophyes
iteratus (giant barred frog) at London Creek (26.83° S,
152.89° E), a low altitude (150 m) site near the town of
Peachester in southeast Queensland, Australia. This
population was chosen for several reasons: (1) it was
known from past sampling to be chytridiomycosispositive (H. B. Hines unpubl. data), (2) the frogs were
already being used in a mark-recapture study, so no
extra toe-clipping would be necessary to undertake
this project, (3) due to the non-declining status of the
population and the fact that morbid frogs had not
been sighted at the creek in several years (H. B.
Hines pers. obs.), infected individuals within the population were expected to harbor light infections. The
examination of individuals with light infections by an
insensitive diagnostic technique is likely to pronounce the inadequacies of that technique, as the low
numbers of zoosporangia present are likely to go
undetected and thus yield many false-negatives (Van
Ells et al. 2003). Conversely, severe infections would
likely be detected even by an insensitive diagnostic
technique, possibly leading to the erroneous conclusion that there is no difference in the sensitivities of
the techniques being compared, when one does
indeed exist.
Field collection. On 4 sampling dates between 3
November 2003 and 22 March 2004, a total of 101 juvenile Mixophyes iteratus were caught using clean,
unused plastic bags. Each frog was both toe-clipped
(for use in histological examination) and swabbed (for
use in the Taqman PCR analysis). Toe-clipping consisted of removing a portion of between 1 and 3 toes
(mean = 2.3), the exact number of toes used depending
143
on the identifier number (Hero 1989) being used to
individually mark that animal for a concurrent markrecapture population study that was taking place. Toes
were placed in 70% ethanol immediately after clipping. The swab technique was performed by firmly
running a cotton swab (Medical Wire & Equipment,
MW 100-100) once over the frog’s dorsal surface; once
over one of the frog’s sides, from groin to armpit; once
on the ventral surface; once on the underside of one
thigh; and once on the webbing of one foot. Swabs
were then replaced in their original container, and
were frozen at –20°C upon return from the field (within
10 h of sampling). Swabs remained frozen until PCR
analysis could take place (range = 62 to 470 d; mean =
255.4 d). Snout-vent length (SVL) of all frogs was
measured to the nearest 0.1 mm using vernier calipers.
Laboratory analysis. Diagnosis of toe-clips for the
presence of Batrachochytrium dendrobatidis was by
histological examination (Culling 1963, Berger et al.
1999b). All toe-clips were decalcified for 48 h in 10%
formic acid, histologically processed in a Shandon
Hypercenter XP tissue processor, embedded in paraffin wax, longitudinally sectioned at 5 µm, and stained
using H&E. The H&E stain was chosen over other
staining procedures because, as mentioned previously,
it has been the most commonly used method in past
surveys, and we wanted to be able to assess the
accuracy of those surveys. The stratum corneum and
stratum granulosum of 5 consecutive serial sections
from the middle of each sample were examined under
a compound microscope at 200 × and 400 × magnification. Approximately 35 fields of view at 200 × magnification were examined per toe. Samples were
considered positive for chytridiomycosis if damaged
epidermis was present and chytrid zoosporangia
clearly evident. Due to the inherently low specificity of
the diagnostic technique, diagnosis of infection by B.
dendrobatidis on some samples could not always be
unequivocally determined, a problem also noted in
previous studies (Retallick et al. 2004, Ouellet et al.
2005). These samples were labeled ‘suspicious’, and
were characterized by minimal or no sloughing of the
epidermis and one to a few structures which resembled chytrid zoosporangia.
Swabs were prepared for real-time Taqman PCR
analysis following procedure outlined by Boyle et al.
(2004), except that nucleic acids were extracted using
50 µl PrepMan Ultra and the tip of the swab was used
instead of a toe. To ensure the integrity of results, a
negative control (H2O) was run in triplicate on every
96-well PCR plate. Samples in which Batrachochytrium dendrobatidis was detected in all 3 wells of the
triplicate analysis were considered positive for chytridiomycosis; samples in which B. dendrobatidis was
detected in 1 or 2 wells, but not all 3, were considered
144
Dis Aquat Org 71: 141–148, 2006
to have yielded equivocal results and were labeled
‘suspicious’, and samples in which no B. dendrobatidis
was detected were considered negative for chytridiomycosis.
Data analysis. Chi-squared tests were performed to
determine if there was a significant difference in
the sensitivities of the 2 diagnostic techniques, and
odds ratios produced. Logistic regression was performed to determine if there was a significant relationship between the length of time a swab was
frozen, and the PCR result (positive/negative)
obtained for that swab. The mean SVL of frogs yielding positive PCR results was compared to that of
frogs yielding negative PCR results using an independent t-test. The relationship between SVL and
the number of zoospores (mean value of triplicate
assay, log + 1 transformed) detected was assessed
using linear regression. All analyses were performed
in STATISTICA 6.0 (StatSoft).
RESULTS
Both diagnostic techniques examined were able to
detect Batrachochytrium dendrobatidis, but the techniques varied significantly in their detection capabilities (Table 1). Depending on whether the suspicious
histological results were considered positive, negative,
or were excluded from the analysis, histology detected
the fungus on 6.9, 0.99 or 1.1% of the frogs examined,
respectively. The Taqman PCR assay detected B. dendrobatidis on 22.8, 14.9, or 16.1% of the frogs, these
figures again depending on inclusion of the suspicious
results. The swab-PCR technique was significantly
more sensitive than was toe-clip histology, regardless
of whether suspicious results were considered positive
(χ21,0.05 = 10.02; p = 0.002), negative (χ21,0.05 = 13.3; p =
0.0003), or were excluded from the analysis (χ21,0.05 =
13.7; p = 0.0002), and the odds of detecting B. dendrobatidis were 4.0, 17.4, and 18.1 times higher using the
swab-PCR technique than using toe-clip histology,
respectively.
Table 1. Batrachochytrium dendrobatidis infecting Mixophyes iteratus. Infection status of 101 juvenile frogs as
determined by 2 diagnostic techniques used to detect chytridiomycosis. Numbers in parentheses: percentage of total
rogs sampled that yielded the specified result
Diagnostic
technique
No.
positive
No.
suspicious
No.
negative
Toe-clip histology
Swab-PCR
1 (1.0)
15 (14.9)
6 (5.9)
8 (7.9)
94 (93.1)
78 (77.2)
All frogs with suspicious PCR results were deemed
negative by histology (Table 2). Only 1 frog that was
considered suspicious by histology yielded a positive
PCR result (a lightly infected frog whose swab bore 2
zoospore equivalents). The single positive histological
result was from a frog determined by PCR to be negative. The mean number of zoospore equivalents on
swabs from infected frogs was 88.9 ± 56.4 (SE).
Frogs yielding positive PCR results were caught on
only 2 of the 4 sampling dates (Fig. 2), and the 22
March sampling session yielded a significantly smaller
proportion of positive PCR results than did the 4 February sampling session (χ21,0.05 = 4.48; p = 0.034). Batrachochytrium dendrobatidis was detected on multiple
swabs that had remained frozen for 377 d, and there
was no correlation between a frog’s PCR result (positive/negative) and the length of time that had expired
Table 2. Batrachochytrium dendrobatidis infecting Mixophyes iteratus. Comparison of results of all frogs that yielded
a non-negative result by either Taqman PCR or histology, and
quantitation of B. dendrobatidis zoospores on swabs taken
from infected frogs (determined by Taqman PCR assay,
expressed as triplicate mean). –: negative histological result
Taqman PCR result
Histology result
Positive
924
109
80
61
45
29
28
24
18
4
4
3
2
2
0.4
–
–
–
–
–
–
–
–
–
–
–
–
Suspicious
–
–
Suspicious
4
1
1
1
0.4
0.3
0.2
0.1
–
–
–
–
–
–
–
–
Negative
0
0
0
0
0
0
Positive
Suspicious
Suspicious
Suspicious
Suspicious
Suspicious
145
Kriger et al.: Detecting chytridiomycosis in wild frogs
40
30
20
10
0
3-Nov-03
14-Jan-04
4-Feb-04
22-Mar-04
Date of sampling
Fig. 2. Batrachochytrium dendrobatidis. Temporal distribution of sampling, and number of positive, suspicious and
negative PCR results obtained on each sampling date (diagonally hatched: positive; white: suspicious; cross-hatched:
negative)
between sampling and PCR analysis (logistic regression: Wald = 1.08; p = 0.30; Fig. 3). Thus, it is unlikely
that significant degradation of the fungal DNA took
place while swabs were frozen.
Frogs that yielded negative PCR results had a significantly larger SVL (mean = 42.1 mm) than frogs yielding positive PCR results (mean = 38.0 mm) (t-value =
–3.16; df = 91; p = 0.002; Fig. 4). This relationship was
significant even when the results of frogs sampled during only 1 sampling session were analyzed (4 February
2004: t-value = –2.59; df = 51; p = 0.013) and thus it is
unlikely to be an artefact of any potential sampling
bias that may have occurred (whereby a disproportionate number of small frogs may have unwittingly been
sampled during a period of increased chytrid levels).
There was no relationship between SVL and the number of zoospores found on infected (positive) frogs (n =
15; r2 = 0.194; p = 0.10), but the sample size may have
been too small to determine an effect, if one did indeed
exist. When suspicious frogs (n = 8) were included in
the analysis, there was a significant negative relationship between SVL and zoospores (n = 23; r2 = 0.196;
p = 0.034).
DISCUSSION
3
Log+1 Zoospores
Number of results
50
ferred technique for the sampling of wild amphibians
for chytridiomycosis in future surveys.
The increased sensitivity of the swab-PCR technique
described herein is likely due to the much greater proportion of the amphibian’s body being sampled than in
any previously described diagnostic technique. Batrachochytrium dendrobatidis does not evenly distribute
over the amphibian skin (Pessier et al. 1999) and,
therefore, the thin strips of skin examined in histological diagnoses may not harbor chytrid zoosporangia,
even on severely infected individuals (Boyle et al.
2004). As the specificity of the Taqman PCR assay was
confirmed by the failure of the assay to detect any of
5 closely related species of Chytridiomycetes fungi
(Boyle et al. 2004), it is unlikely that the higher number
of positive diagnoses by the swab-PCR technique was
due to false positives.
Conservation programs will benefit greatly from the
improved sensitivity of this technique over those used
in past surveys, as false-negatives compromise the
quality and usefulness of disease prevalence data and
obscure the relationships under investigation. The
high sensitivity of the swab-PCR technique will allow
researchers to achieve a more thorough understanding
a
2
1
0
25
Number of negative
PCR results
60
b
20
15
10
5
0
We have shown that the swab technique in conjunction with the Taqman PCR assay can be at least twice
as likely as histology to detect chytridiomycosis in wild
frogs, a result consistent with the findings of Boyle et
al. (2004). As the swab-PCR technique yields quantitative data, allows for more rapid analysis of samples,
provides higher specificity than does histology, and is
less harmful to the frog, we recommend it as the pre-
0
50
100 150 200 250 300 350 400 450 500
Time frozen (d)
Fig. 3. Batrachochytrium dendrobatidis. Effect of storage time
on PCR result (a) Quantitation of positive and suspicious
results based on mean number of B. dendrobatidis zoospores
n : positive PCR results, n = 15;
detected in triplicate assay (n
h : suspicious PCR results, n = 8). (b) Number of negative
results (n = 78)
146
Dis Aquat Org 71: 141–148, 2006
2
1
0
25
30
35
40
45
50
55
Snout-vent length (mm)
Fig. 4. Batrachochytrium dendrobatidis infecting Mixophyes
iteratus. Relationship between snout-vent length (SVL) and
number of B. dendrobatidis zoospores found on positive
n , n = 15), suspicious (h
h , n = 8) and negative (×
×, n = 78)
(n
individuals, as determined by Taqman PCR assay
of the differential effects that chytridiomycosis may
have on populations and species living at various altitudes and latitudes, and in different breeding habitats.
This will allow for prioritization of disease monitoring
in locations where the disease status of populations is
unknown, and will increase our ability to predict which
populations and species are most susceptible to population decline.
The non-invasive nature of the swab-PCR technique
will allow for the sampling of threatened amphibian
species without the ethical issues surrounding toeclipping (May 2004), or the associated possibility of
decreasing survivorship inherent in surveys that use
toe-clipping (McCarthy & Parris 2004). It will also
facilitate investigation into the possibility that there
are non-amphibian hosts/vectors of Batrachochytrium
dendrobatidis (e.g. crayfish, fish, birds), and will assist
researchers in determining the ways in which the
fungus persists in areas where amphibians have disappeared, and the ways it may be transported into
naïve amphibian populations.
The results of our study imply that past surveys have
likely underestimated the prevalence of chytridiomycosis in wild amphibian populations. This has important ramifications for the design of disease monitoring
protocols for surveys focused on determining the presence or absence of chytridiomycosis in specific locations. The proper design of these surveys relies on
knowledge of the minimum disease prevalence that
would be expected in the population to be sampled
if indeed the disease were present (DiGiacomo &
Koepsell 1986). This prevalence is used to determine
the number of animals that need to be sampled (and
yield negative results) before one can be 95% confident that the disease is absent from the population
being sampled (Fig. 5). The design of protocols for
chytridiomycosis surveys that will be undertaken using
the swab-PCR technique described herein should
therefore not be based on prevalence rates determined
by field studies that have employed less sensitive
diagnostic techniques.
Chytridiomycosis levels in juveniles of our study
population decreased with increasing SVL (Fig. 4).
There are at least 3 possible explanations for this relationship: (1) individuals experienced an ontogenetic
shift in immune capacity, resulting in decreasing disease levels with increasing age (and therefore SVL);
(2) the presence of Batrachochytrium dendrobatidis on
infected individuals negatively influenced their developmental rates; (3) infected individuals experienced
high mortality before achieving large body size, resulting in few captures of large, infected frogs. Further
work is needed to resolve these issues, and to determine the generality of our results. We recommend
that researchers report frogs’ SVLs in future published
studies.
The quantitative nature of Taqman PCR data opens
up new avenues of chytridiomycosis research. There
are currently no published studies which have quantified the degree to which the severity of frogs’ chytrid
infections varies among populations. This information
is necessary, as populations with equal disease prevalence may differ significantly in the severity of their
infections. Without the ability to detect and quantify
this difference, a researcher may falsely conclude that
neither population is more threatened than the other,
and appropriate management action may not be
implemented. We recommend that quantified results
of the numbers of zoospores per sample accompany
prevalence data in all published studies. This will provide baseline data that can be used to track future
changes in chytridiomycosis levels in the same popula-
300
250
Sample size
Log+1 Zoospores
3
200
150
100
50
0
0
5
10
15
20
25
30
35
40
45
50
55
60
Minimum expected prevalence (%)
Fig. 5. Number of animals required for sampling (if all samples yield negative diagnoses) to be 95% confident that
disease is absent from a population, based on minimum
expected disease prevalence. Graph constructed from data
in DiGiacomo & Koepsell (1986)
Kriger et al.: Detecting chytridiomycosis in wild frogs
tion, and will also allow inferences to be drawn regarding the differing levels of the disease between populations. For quantified data to be comparable across
studies, a standardized swab technique should be used
by researchers worldwide.
We found no relationship between the length of time
a swab remained frozen and its subsequent PCR result
(Fig. 3), suggesting that only limited degradation of the
fungal DNA took place while the swabs were frozen. It
remains unknown, however, how much degradation
occurs in the time between sampling and freezing the
swabs (from 1 to 10 h in this study). As research expeditions may take place in remote areas and/or hot,
humid regions where no form of refrigeration is available for prolonged periods of time, future research
should focus on determining how long swabs can
remain in field conditions without adverse effects.
It should be noted that the swab-PCR technique is
not without error, as exhibited by: (1) the presence of
equivocal results, and (2) the failure to detect Batrachochytrium dendrobatidis on the single frog that
tested positive by histology. Equivocal results can conceivably arise from low-level contamination during
laboratory analysis, in which 1 or 2, but not all 3 wells
of the triplicate are exposed to B. dendrobatidis from
an outside source (e.g. airborne zoospores or technician error). They can also be obtained if the actual
number of zoospores present on the sample is very low
(1 to a few). This is due to the fact that the sample must
be diluted prior to PCR analysis, and only a small portion of the original sample is analyzed in each well of
the triplicate. Thus it is possible that chytrid DNA may
not end up in all 3 wells of the triplicate. The number of
equivocal results we obtained through the PCR assay
(n = 8) was roughly equal to the number of suspicious
results we obtained through histology (n = 6), and is
therefore no more of an issue than it was with the older
techniques. However, equivocal results can be reduced in future studies by re-analysis of the supernatant that remains from the original DNA extraction
process. The failure of the swab-PCR technique to
detect B. dendrobatidis on the frog deemed positive by
histology may be due to the swab not having been run
over any part of the frog’s body that was infected. The
swab technique we used consisted of only 5 strokes of
the swab over the frog’s body, and therefore was not
comprehensive. Increasing the number of strokes
should reduce the likelihood of a false-negative.
Even with these potential shortfalls, the swab-PCR
technique remains an excellent tool for the diagnosis of
chytridiomycosis infection in wild amphibians, and
should greatly improve our ability to acquire the data
necessary to more thoroughly understand chytridiomycosis and to conserve remaining amphibian populations.
147
Acknowledgements. A. Hyatt, D. Boyle, and V. Olsen (chytridiomycosis group, CSIRO) developed the swab-PCR technique described in this paper. K.M.K. thanks V. Olsen for
providing PCR training and helpful information on all aspects
of PCR analysis. Thanks to D. Mendez for providing histology
training and 2nd opinions on diagnosis of all slides initially
suspected of holding B. dendrobatidis. We thank S. Wapstra
for assistance in preparation of slides for histology, S. Canyon
for help with PCR analysis, and N. Doak and B. Manning for
assistance with field collection of samples. This project was
partially funded by the Eppley Foundation for Research, the
Department of Environment and Heritage Chytridiomycosis
Mapping Protocol Tender RFT63/2000 and a Natural Heritage
Trust Fund. We also thank the Consortium for Conservation
Medicine for financial assistance.
LITERATURE CITED
Aplin K, Kirkpatrick P (1999) Progress report on investigations into chytrid fungal outbreak in Western Australia.
Western Australia Museum, Perth
Aplin K, Kirkpatrick P (2000) Chytridiomycosis in southwest
Australia: historical sampling documents the date of introduction, rates of spread and seasonal epidemiology, and
sheds new light on chytrid ecology. In: Williams K, Speare
R (eds) Getting the Jump! on Amphibian Disease: Conference and Workshop. Rainforest CRC, Cairns, p 24
Berger L, Speare R, Daszak P, Green DE and 10 others (1998)
Chytridiomycosis causes amphibian mortality associated
with population declines in the rain forests of Australia
and Central America. Proc Natl Acad Sci USA 95:
9031–9036
Berger L, Speare R, Hyatt A (1999a) Chytrid fungi and
amphibian declines: overview, implications and future
directions. In: Campbell A (ed) Declines and disappearances of Australian frogs. Environment Australia, Canberra, p 23–33
Berger L, Speare R, Kent A (1999b) Diagnosis of chytridiomycosis in amphibians by histologic examination. Zoos Print
J 15:184–190
Berger L, Hyatt AD, Olsen V, Hengstberger SG, Boyle D,
Marantelli G, Humphreys K, Longcore JE (2002) Production of polyclonal antibodies to Batrachochytrium dendrobatidis and their use in an immunoperoxidase test for
chytridiomycosis in amphibians. Dis Aquat Org 48:
213–220
Bonaccorso E, Guayasamin JM, Méndez D, Speare R (2003)
Chytridiomycosis in a Venezuelan amphibian (Bufonidae:
Atelopus cruciger). Herpetol Rev 34:331–334
Bosch J, Martínez-Solano I, García-París M (2001) Evidence
of a chytrid fungus infection involved in the decline of the
common midwife toad (Alytes obstetricans) in protected
areas of central Spain. Biol Conserv 97:331–337
Boyle DG, Boyle DB, Olsen V, Morgan JAT, Hyatt AD (2004)
Rapid quantitative detection of chytridiomycosis (Batrachochytrium dendrobatidis) in amphibian samples using
real-time Taqman PCR assay. Dis Aquat Org 60:141–148
Culling CF (1963) Handbook of histopathological techniques.
Butterworths, London
Cunningham AA, Daszak P, Rodriguez JP (2003) Pathogen
pollution: defining a parasitological threat to biodiversity
conservation. J Parasitol 89(Suppl):S78–S83
Daszak P, Strieby A, Cunningham AA, Longcore JE, Brown
CC, Porter D (2004) Experimental evidence that the bullfrog (Rana catesbeiana) is a potential carrier of chytridio-
148
Dis Aquat Org 71: 141–148, 2006
mycosis, an emerging fungal disease of amphibians.
Herpetol J 14:201–207
DiGiacomo RF, Koepsell TD (1986) Sampling for detection of
infection or disease in animal populations. J Am Vet Med
Assoc 189:22–23
Green DE, Converse KA, Schrader AK (2002) Epizootiology of
sixty-four amphibian morbidity and mortality events in the
USA, 1996–2001. Ann NY Acad Sci 969:323–339
Hero JM (1989) A simple code for toe clipping anurans.
Herpetol Rev 20:66–67
Hopkins S, Channing A (2003) Chytrid fungus in Northern
and Western Cape frog populations, South Africa. Herpetol
Rev 34:4
Lamirande EW, Nichols DK (2002) Effects of host age on
susceptibility to cutaneous chytridiomycosis in blue-andyellow poison dart frogs (Dendrobates tinctorius). In:
McKinnell RG, Carlson DL (eds) Proc 6th Int Symp Pathol
Reptiles Amphibians. Saint Paul, MN, p 3–13
Lips KR (1999) Mass mortality and population declines of
anurans at an upland site in western Panama. Conserv
Biol 13:117–125
Lips KR, Green DE, Papendick R (2003) Chytridiomycosis
in wild frogs from southern Costa Rica. J Herpetol 37:
215–218
Longcore JE, Pessier AP, Nichols DK (1999) Batrachochytrium
dendrobatidis gen. et sp. nov., a chytrid pathogenic to
amphibians. Mycologia 91:219–227
May RM (2004) Ethics and amphibians. Nature 431:403
Mazzoni R, Cunningham AC, Daszak P, Apolo A, Perdomo E,
Speranza G (2003) Emerging pathogen of wild amphibians in frogs (Rana catesbiana) farmed for international
trade. Emerg Infect Dis 9:995–998
McCarthy MA, Parris KM (2004) Clarifying the effect of toe
clipping on frogs with Bayesian statistics. J Appl Ecol 41:
780–786
McDonald KR, Mendez D, Muller R, Freeman AB, Speare R
(2005) Decline in the prevalence of chytridiomycosis in
frog populations in North Queensland, Australia. Pac
Conserv Biol 11:114–120
Morehouse EA, James TY, Ganley ARD, Vilgaly R, Berger L,
Murphy PJ, Longcore JE (2003) Multilocus sequence
typing suggests the chytrid pathogen of amphibians is a
recently emerged clone. Mol Ecol 12:395–403
Olsen V, Hyatt A, Boyle D, Mendez D (2004) Co-localisation
of Batrachochytrium dendrobatidis and keratin for enhanced diagnosis of chytridiomycosis. Dis Aquat Org 61:
85–88
Ouellet M, Mikaelian I, Pauli BD, Rodrigue J, Green DM
(2005) Historical evidence for widespread chytrid infection in North American amphibian populations. Conserv
Biol 19:1431–1440
Parker JM, Mikaelian I, Hahn N, Diggs HE (2002) Clinical
diagnosis and treatment of epidermal chytridiomycosis
in African clawed frogs (Xenopus tropicalis). Comp Med
52:265–268
Parris MJ (2004) Hybrid response to pathogen infection in
interspecific crosses between two amphibian species
(Anura: Ranidae). Evol Ecol Res 6:457–471
Pessier AP, Nichols DK, Longcore JE, Fuller MS (1999) Cutaneous chytridiomycosis in poison dart frogs (Dendrobates
spp.) and White’s tree frog (Litoria caerulea). J Vet Diagn
Invest 11:194–199
Rachowicz LJ, Vredenburg VT (2004) Transmission of Batrachochytrium dendrobatidis within and between amphibian life stages. Dis Aquat Org 61:75–83
Reed KD, Ruth GR, Meyer JA, Shukla SK (2000) Chlamydia
pneumoniae infection in a breeding colony of African
clawed frogs (Xenopus tropicalis). Emerg Infect Dis 6:
196–199
Retallick R, McCallum H, Speare R (2004) Endemic infection
of the amphibian chytrid fungus in a frog community postdecline. PLOS Biol 2:1–7
Ron SR, Duellman WE, Coloma LA, Bustamante MR (2003)
Population decline of the jambato toad Atelopus ignescens
(Anura, Bufonidae) in the Andes of Ecuador. J Herpetol
37:117–126
Speare R, Berger L (2004) Global distribution of chytridiomycosis in amphibians. www.jcu.edu.au/school/phtm/
PHTM/frogs/chyglob.htm
Van Ells T, Stanton J, Strieby A, Daszak P, Hyatt AD, Brown C
(2003) Use of immunohistochemistry to diagnose chytridiomycosis in dyeing poison dart frogs (Dendrobates
tinctorius). J Wildl Dis 39:742–745
Viggers KL, Lindenmayer DB, Spratt DM (1993) The importance of disease in reintroduction programmes. Wildl Res
20:687–698
Waldman B (2001) Chytridiomycosis in New Zealand frogs.
Surveillance 28:9–11
Weldon C, du Preez LH (2004) Decline of the Kihansi spray
toad, Nectophrynoides asperginis, from the Udzungwa
mountains, Tanzania. Froglog 62:2–3
Weldon C, du Preez LH, Muller R, Hyatt AD, Speare R (2004)
Origin of the amphibian chytrid fungus. Emerg Infect Dis
10:2100–2105
Editorial responsibility: Otto Kinne,
Oldendorf/Luhe, Germany
Submitted: May 5, 2005; Accepted: March 23, 2006
Proofs received from author(s): July 20, 2006