Defrosting the digital library: bibliographic tools for the next generation web

D Hull, SR Pettifer, DB Kell - PLoS computational biology, 2008 - journals.plos.org
Many scientists now manage the bulk of their bibliographic information electronically,
thereby organizing their publications and citation material from digital libraries. However, a …

Publishing perishing? Towards tomorrow's information architecture

MR Seringhaus, MB Gerstein - BMC bioinformatics, 2007 - Springer
Scientific articles are tailored to present information in human-readable aliquots. Although
the Internet has revolutionized the way our society thinks about information, the traditional …

HubMed: a web-based biomedical literature search interface

AD Eaton - Nucleic acids research, 2006 - academic.oup.com
HubMed is an alternative search interface to the PubMed database of biomedical literature,
incorporating external web services and providing functions to improve the efficiency of …

Update on XplorMed: a web server for exploring scientific literature

C Perez-Iratxeta, AJ Perez, P Bork… - Nucleic Acids …, 2003 - academic.oup.com
As scientific literature databases like MEDLINE increase in size, so does the time required to
search them. Scientists must frequently inspect long lists of references manually, often just …

Databases, data tombs and dust in the wind

JD Wren, A Bateman - Bioinformatics, 2008 - academic.oup.com
Contact: jdwren@ gmail. com As biomedical data accumulates, the need to store, share and
organize it grows. Consequently, the number of Internet-accessible databases has been …

Tools and data services registry: a community effort to document bioinformatics resources

J Ison, K Rapacki, H Ménager, M Kalaš… - Nucleic acids …, 2016 - academic.oup.com
Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to
improvement in human health, agriculture and the environment. In support of these …

Utopia documents: linking scholarly literature with research data

TK Attwood, DB Kell, P McDermott, J Marsh… - …, 2010 - academic.oup.com
Motivation: In recent years, the gulf between the mass of accumulating-research data and
the massive literature describing and analyzing those data has widened. The need for …

WormBase 2014: new views of curated biology

TW Harris, J Baran, T Bieri, A Cabunoc… - Nucleic acids …, 2014 - academic.oup.com
Abstract WormBase (http://www. wormbase. org/) is a highly curated resource dedicated to
supporting research using the model organism Caenorhabditis elegans. With an electronic …

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study

S Poux, CN Arighi, M Magrane, A Bateman… - …, 2017 - academic.oup.com
Motivation Biological knowledgebases, such as UniProtKB/Swiss-Prot, constitute an
essential component of daily scientific research by offering distilled, summarized and …

Challenges and recommendations to improve the installability and archival stability of omics computational tools

S Mangul, T Mosqueiro, RJ Abdill, D Duong… - PLoS …, 2019 - journals.plos.org
Developing new software tools for analysis of large-scale biological data is a key component
of advancing modern biomedical research. Scientific reproduction of published findings …