[HTML][HTML] Integrative analysis of 111 reference human epigenomes

A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen… - Nature, 2015 - nature.com
The reference human genome sequence set the stage for studies of genetic variation and its
association with human disease, but epigenomic studies lack a similar reference. To …

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

E Lieberman-Aiden, NL Van Berkum, L Williams… - science, 2009 - science.org
We describe Hi-C, a method that probes the three-dimensional architecture of whole
genomes by coupling proximity-based ligation with massively parallel sequencing. We …

A comparative encyclopedia of DNA elements in the mouse genome

F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba… - Nature, 2014 - nature.com
The laboratory mouse shares the majority of its protein-coding genes with humans, making it
the premier model organism in biomedical research, yet the two mammals differ in …

Systematic localization of common disease-associated variation in regulatory DNA

MT Maurano, R Humbert, E Rynes, RE Thurman… - Science, 2012 - science.org
Genome-wide association studies have identified many noncoding variants associated with
common diseases and traits. We show that these variants are concentrated in regulatory …

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns

S John, PJ Sabo, RE Thurman, MH Sung, SC Biddie… - Nature …, 2011 - nature.com
Abstract Development, differentiation and response to environmental stimuli are
characterized by sequential changes in cellular state initiated by the de novo binding of …

The accessible chromatin landscape of the human genome

RE Thurman, E Rynes, R Humbert, J Vierstra… - Nature, 2012 - nature.com
DNase I hypersensitive sites (DHSs) are markers of regulatory DNA and have underpinned
the discovery of all classes of cis-regulatory elements including enhancers, promoters …

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

PJ Sabo, MS Kuehn, R Thurman, BE Johnson… - Nature …, 2006 - nature.com
Localized accessibility of critical DNA sequences to the regulatory machinery is a key
requirement for regulation of human genes. Here we describe a high-resolution, genome …

Molecular analysis of genetic differences between Mycobacterium bovis BCG and virulent M. bovis

GG Mahairas, PJ Sabo, MJ Hickey, DC Singh… - Journal of …, 1996 - Am Soc Microbiol
The live attenuated bacillus Calmette-Guérin (BCG) vaccine for the prevention of disease
associated with Mycobacterium tuberculosis was derived from the closely related virulent …

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

PV Kharchenko, AA Alekseyenko, YB Schwartz… - Nature, 2011 - nature.com
Chromatin is composed of DNA and a variety of modified histones and non-histone proteins,
which have an impact on cell differentiation, gene regulation and other key cellular …

[PDF][PDF] Bone dysplasia sclerosteosis results from loss of the SOST gene product, a novel cystine knot–containing protein

ME Brunkow, JC Gardner, J Van Ness… - The American Journal of …, 2001 - cell.com
Sclerosteosis is an autosomal recessive sclerosing bone dysplasia characterized by
progressive skeletal overgrowth. The majority of affected individuals have been reported in …