User profiles for "author:Guttman M"

Mitchell Guttman

Professor of Biology, California Institute of Technology
Verified email at lncrna.caltech.edu
Cited by 52173

Modular regulatory principles of large non-coding RNAs

M Guttman, JL Rinn - Nature, 2012 - nature.com
It is clear that RNA has a diverse set of functions and is more than just a messenger between
gene and protein. The mammalian genome is extensively transcribed, giving rise to …

Long non-coding RNAs: definitions, functions, challenges and recommendations

JS Mattick, PP Amaral, P Carninci… - … reviews Molecular cell …, 2023 - nature.com
Genes specifying long non-coding RNAs (lncRNAs) occupy a large fraction of the genomes
of complex organisms. The term 'lncRNAs' encompasses RNA polymerase I (Pol I), Pol II …

Computational methods for transcriptome annotation and quantification using RNA-seq

M Garber, MG Grabherr, M Guttman, C Trapnell - Nature methods, 2011 - nature.com
High-throughput RNA sequencing (RNA-seq) promises a comprehensive picture of the
transcriptome, allowing for the complete annotation and quantification of all genes and their …

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

M Guttman, I Amit, M Garber, C French, MF Lin… - Nature, 2009 - nature.com
There is growing recognition that mammalian cells produce many thousands of large
intergenic transcripts,,,. However, the functional significance of these transcripts has been …

lincRNAs act in the circuitry controlling pluripotency and differentiation

M Guttman, J Donaghey, BW Carey, M Garber… - Nature, 2011 - nature.com
Although thousands of large intergenic non-coding RNAs (lincRNAs) have been identified in
mammals, few have been functionally characterized, leading to debate about their biological …

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

M Guttman, M Garber, JZ Levin, J Donaghey… - Nature …, 2010 - nature.com
Massively parallel cDNA sequencing (RNA-Seq) provides an unbiased way to study a
transcriptome, including both coding and noncoding genes. Until now, most RNA-Seq …

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3

CA McHugh, CK Chen, A Chow, CF Surka, C Tran… - Nature, 2015 - nature.com
Many long non-coding RNAs (lncRNAs) affect gene expression, but the mechanisms by
which they act are still largely unknown. One of the best-studied lncRNAs is Xist, which is …

[HTML][HTML] A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

M Huarte, M Guttman, D Feldser, M Garber, MJ Koziol… - Cell, 2010 - cell.com
Recently, more than 1000 large intergenic noncoding RNAs (lincRNAs) have been reported.
These RNAs are evolutionarily conserved in mammalian genomes and thus presumably …

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

AM Khalil, M Guttman, M Huarte… - Proceedings of the …, 2009 - National Acad Sciences
We recently showed that the mammalian genome encodes> 1,000 large intergenic
noncoding (linc) RNAs that are clearly conserved across mammals and, thus, functional …

[HTML][HTML] Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

M Guttman, P Russell, NT Ingolia, JS Weissman… - Cell, 2013 - cell.com
Large noncoding RNAs are emerging as an important component in cellular regulation.
Considerable evidence indicates that these transcripts act directly as functional RNAs rather …