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Prominent disease-causing DNA viruses include [[Herpesvirales|herpesviruses]], [[Papillomaviridae|papillomaviruses]], and [[Poxviridae|poxviruses]].
==Baltimore classification==
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dsDNA viruses make use of several mechanisms to replicate their genome. Bidirectional replication, in which two replication forks are established at a replication origin site and move in opposite directions of each other, is widely used.<ref name=bidi >{{cite web|title=dsDNA bidirectional replication|url=https://viralzone.expasy.org/1939|website=ViralZone|publisher=Swiss Institute of Bioinformatics|access-date=24 September 2020}}</ref> A rolling circle mechanism that produces linear strands while progressing in a loop around the circular genome is also common.<ref name=dsdnarcr >{{cite web|title=dsDNA rolling circle replication|url=https://viralzone.expasy.org/2676|website=ViralZone|publisher=Swiss Institute of Bioinformatics|access-date=24 September 2020}}</ref><ref>{{cite journal |vauthors=Bernstein H, Bernstein C |date=5 July 1973 |title=Circular and branched circular concatenates as possible intermediates in bacteriophage T4 DNA replication |journal=J Mol Biol |volume=77 |issue=3 |pages=355–361 |doi=10.1016/0022-2836(73)90443-9 |pmid=4580243}}</ref> Some dsDNA viruses use a strand displacement method whereby one strand is synthesized from a template strand, and a complementary strand is then synthesized from the prior synthesized strand, forming a dsDNA genome.<ref name=displace >{{cite web|title=DNA strand displacement replication|url=https://viralzone.expasy.org/1940|website=ViralZone|publisher=Swiss Institute of Bioinformatics|access-date=24 September 2020}}</ref> Lastly, some dsDNA viruses are replicated as part of a process called [[replicative transposition]] whereby a viral genome in a host cell's DNA is replicated to another part of a host genome.<ref name=reptrans>{{cite web|title=Replicative transposition|url=https://viralzone.expasy.org/4017|website=ViralZone|publisher=Swiss Institute of Bioinformatics|access-date=24 September 2020}}</ref>
dsDNA viruses can be subdivided between those that replicate in the [[cell nucleus]], and as such are relatively dependent on host cell machinery for transcription and replication, and those that replicate in the [[cytoplasm]], in which case they have evolved or acquired their own means of executing transcription and replication.<ref name=cann122 >[[#cann|Cann 2015]], pp. 122–127</ref> dsDNA viruses are also commonly divided between tailed dsDNA viruses, referring to members of the realm ''Duplodnaviria'', usually the tailed bacteriophages of the order ''Caudovirales'', and tailless or non-tailed dsDNA viruses of the realm ''Varidnaviria''.<ref name=duplo >{{cite web|vauthors=Koonin EV, Dolja VV, Krupovic M, Varsani A, Wolf YI, Yutin N, Zerbini M, Kuhn JH|title=Create a megataxonomic framework, filling all principal/primary taxonomic ranks, for dsDNA viruses encoding HK97-type major capsid proteins|url=https://
===Single-stranded DNA viruses===
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''[[Duplodnaviria]]'' contains dsDNA viruses that encode a major capsid protein (MCP) that has the HK97 fold. Viruses in the realm also share a number of other characteristics involving the capsid and capsid assembly, including an icosahedral capsid shape and a terminase enzyme that packages viral DNA into the capsid during assembly. Two groups of viruses are included in the realm: tailed bacteriophages, which infect prokaryotes and are assigned to the order ''[[Caudovirales]]'', and herpesviruses, which infect animals and are assigned to the order ''[[Herpesvirales]]''.<ref name=duplo />
''Duplodnaviria'' is a very ancient realm, perhaps predating the [[last universal common ancestor]] (LUCA) of cellular life. Its origins not known, nor whether it is monophyletic or polyphyletic. A characteristic feature is the HK97-fold found in the MCP of all members, which is found outside the realm only in [[encapsulin]]s, a type of nanocompartment found in bacteria: this relation is not fully understood.<ref name=duplo /><ref name=krupovic >{{cite journal|vauthors=Krupovic M, Koonin EV|date=21 March 2017|title=Multiple origins of viral capsid proteins from cellular ancestors|journal=Proc Natl Acad Sci U S A|volume=114|issue=12|pages=E2401–E2410|doi=10.1073/pnas.1621061114|pmc=5373398|pmid=28265094|bibcode=2017PNAS..114E2401K |doi-access=free}}</ref><ref name=luca >{{cite journal|last1=Krupovic|first1=M|last2=Dolja|first2=VV|last3=Koonin|first3=EV|title=The LUCA and its complex virome.|journal=Nat Rev Microbiol|date=14 July 2020|volume=18|issue=11|pages=661–670|doi=10.1038/s41579-020-0408-x|pmid=32665595|s2cid=220516514|url=https://bpp.oregonstate.edu/sites/agscid7/files/bpp/attachments/lucavirome2020.pdf |archive-url=https://web.archive.org/web/20201027183841/https://bpp.oregonstate.edu/sites/agscid7/files/bpp/attachments/lucavirome2020.pdf |archive-date=2020-10-27 |url-status=live|access-date=24 September 2020}}</ref>
The relation between caudoviruses and herpesviruses is also uncertain: they may share a common ancestor or herpesviruses may be a divergent clade from the realm ''Caudovirales''. A common trait among duplodnaviruses is that they cause latent infections without replication while still being able to replicate in the future.<ref>{{cite journal|vauthors=Weidner-Glunde M, Kruminis-Kaszkiel E, Savanagoudar M|date=February 2020|title=Herpesviral Latency—Common Themes|journal=Pathogens|volume=9|issue=2|pages=125|doi=10.3390/pathogens9020125|pmc=7167855|pmid=32075270|doi-access=free}}</ref><ref>{{cite web|title=Virus latency|url=https://viralzone.expasy.org/3970|website=ViralZone|publisher=Swiss Institute of Bioinformatics|access-date=24 September 2020}}</ref> Tailed bacteriophages are ubiquitous worldwide,<ref>{{cite journal|vauthors=Andrade-Martínez JS, Moreno-Gallego JL, Reyes A|date=August 2019|title=Defining a Core Genome for the Herpesvirales and Exploring their Evolutionary Relationship with the Caudovirales|journal=Sci Rep|volume=9|issue=1|pages=11342 |doi=10.1038/s41598-019-47742-z|pmc=6683198|pmid=31383901|bibcode=2019NatSR...911342A}}</ref> important in marine ecology,<ref>{{cite journal|vauthors=Wilhelm SW, Suttle CA|date=October 1999|title=Viruses and Nutrient Cycles in the Sea: Viruses play critical roles in the structure and function of aquatic food webs|journal=BioScience|volume=49|issue=10|pages=781–788|doi=10.2307/1313569|jstor=1313569|doi-access=free}}</ref> and the subject of much research.<ref>{{cite journal|vauthors=Keen EC|date=January 2015|title=A century of phage research: Bacteriophages and the shaping of modern biology|journal=BioEssays|volume=37|issue=1|pages=6–9|doi=10.1002/bies.201400152|pmc=4418462|pmid=25521633}}</ref> Herpesviruses are known to cause a variety of epithelial diseases, including [[herpes simplex]], [[chickenpox]] and [[shingles]], and [[Kaposi's sarcoma]].<ref>{{cite journal|vauthors=Kukhanova MK, Korovina AN, Kochetkov SN|date=December 2014|title=Human herpes simplex virus: life cycle and development of inhibitors|journal=Biochemistry (Mosc)|volume=79|issue=13|pages=1635–1652|doi=10.1134/S0006297914130124|pmid=25749169|s2cid=7414402}}</ref><ref>{{cite journal|vauthors=Gershon AA, Breuer J, Cohen JI, Cohrs RJ, Gershon MD, Gilden D, Grose C, Hambleton S, Kennedy PG, Oxman MN, Seward JF, Yamanishi K|date=2 July 2015|title=Varicella zoster virus infection|journal=Nat Rev Dis Primers|volume=1|pages=15016|doi=10.1038/nrdp.2015.16|pmc=5381807|pmid=27188665}}</ref><ref>{{cite journal|vauthors=O'Leary JJ, Kennedy MM, McGee JO|date=February 1997|title=Kaposi's sarcoma associated herpes virus (KSHV/HHV 8): epidemiology, molecular biology and tissue distribution|journal=Mol Pathol|volume=50|issue=1|pages=4–8|doi=10.1136/mp.50.1.4|pmc=379571|pmid=9208806}}</ref>
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Varidnaviria is either monophyletic or polyphyletic and may predate the LUCA. The kingdom ''Bamfordvirae'' is likely derived from the other kingdom ''Helvetiavirae'' via [[Fusion gene|fusion]] of two MCPs to have an MCP with two jelly roll folds instead of one. The single jelly roll (SJR) fold MCPs of ''Helvetiavirae'' show a relation to a group of proteins that contain SJR folds, including the [[Cupin superfamily]] and [[nucleoplasmin]]s.<ref name=vari /><ref name=krupovic /><ref name=luca />
Marine viruses in ''Varidnaviria'' are ubiquitous worldwide and, like tailed bacteriophages, play an important role in marine ecology.<ref>{{cite journal|vauthors=Kauffman KM, Hussain FA, Yang J, Arevalo P, Brown JM, Chang WK, VanInsberghe D, Elsherbini J, Sharma RS, Cutler MB, Kelly L, Polz MF|date=1 February 2018|title=A Major Lineage of Non-Tailed dsDNA Viruses as Unrecognized Killers of Marine Bacteria|journal=Nature|volume=554|issue=7690|pages=118–122|doi=10.1038/nature25474|pmid=29364876|bibcode=2018Natur.554..118K|s2cid=4462007}}</ref> Most identified eukaryotic DNA viruses belong to the realm.<ref name=krupovic2015 >{{cite journal|vauthors=Krupovic M, Koonin EV|date=February 2015|title=Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution|journal=Nat Rev Microbiol|volume=13|issue=2|pages=105–115|doi=10.1038/nrmicro3389|pmc=5898198|pmid=25534808}}</ref> Notable disease-causing viruses in ''Varidnaviria'' include [[adenovirus]]es, [[poxvirus]]es, and the [[African swine fever virus]].<ref name=ictv >{{cite web|url=https://
===Baltimore classification===
dsDNA viruses are classified into three realms and include many taxa that are unassigned to a realm:
* All viruses in ''Duplodnaviria'' are dsDNA viruses.<ref name=duplo />
* In ''Monodnaviria'', members of the class ''[[Papovaviricetes]]'' are dsDNA viruses.<ref name=mono >{{cite web|vauthors=Koonin EV, Dolja VV, Krupovic M, Varsani A, Wolf YI, Yutin N, Zerbini M, Kuhn JH|title=Create a megataxonomic framework, filling all principal taxonomic ranks, for ssDNA viruses|url=https://
* All viruses in ''Varidnaviria'' are dsDNA viruses.<ref name=vari />
* The following taxa that are unassigned to a realm exclusively contain dsDNA viruses:<ref name=vari />
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