Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks (Q41911489): Difference between revisions

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scientific article published on September 2012

Language	Label	Description	Also known as
English	Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks	scientific article published on September 2012

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks (English)

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

0 references

metabolic network

1 reference

based on heuristic

inferred from title

Zoran Nikoloski

5

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

4

object named as

Joachim Selbig

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

author name string

Abdelhalim Larhlimi

1

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Georg Basler

2

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

Sergio Grimbs

3

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

language of work or name

0 references

publication date

1 September 2012

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

28

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

18

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

i502-i508

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

copyright license

Creative Commons Attribution 3.0 Unported

2 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

0 references

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

In silico evidence for gluconeogenesis from fatty acids in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

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1 reference

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5 June 2018

Systems metabolic engineering for chemicals and materials

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

CASOP: a computational approach for strain optimization aiming at high productivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

Hypergraphs and cellular networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

Can sugars be produced from fatty acids? A test case for pathway analysis tools.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

Reconstruction of biochemical networks in microorganisms

1 reference

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5 June 2018

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1 reference

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5 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

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Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

Flux coupling analysis of genome-scale metabolic network reconstructions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

The effects of alternate optimal solutions in constraint-based genome-scale metabolic models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

5 June 2018

Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

1 reference

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5 June 2018

Advances in flux balance analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

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Genome-scale microbial in silico models: the constraints-based approach.

1 reference

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5 June 2018

Two approaches for metabolic pathway analysis?

1 reference

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1 reference

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Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective

1 reference

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A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

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KEGG: kyoto encyclopedia of genes and genomes

1 reference

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Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

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1 reference

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1 reference

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Metabolic capabilities of Escherichia coli: I. synthesis of biosynthetic precursors and cofactors.

1 reference

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18 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

18 August 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3436808

18 August 2018

Chemical space and biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/22962473

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/22962473

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/BIOINFORMATICS/BTS381

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

DBLP publication ID

journals/bioinformatics/LarhlimiBGSN12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 October 2017

ResearchGate publication ID

0 references

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