Taxonomy browser (Treponema pallidum)

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Taxonomy browser (Treponema pallidum)

Treponema pallidum

Taxonomy ID: 160 (for references in articles please use NCBI:txid160)

current name

Treponema pallidum (Schaudinn and Hoffmann 1905) Schaudinn 1905¹⁾

homotypic synonym:

"Microspironema pallidum" (Schaudinn and Hoffmann 1905) Stiles and Pfender 1905, effective name²⁾

"Spirochaeta pallida" Schaudinn and Hoffmann 1905, effective name³⁾

"Spironema pallidum" (Schaudinn and Hoffmann 1905) Vuillemin 1905, effective name⁴⁾

"Spirillum pallidum" (Schaudinn and Hoffmann 1905) Mace 1913, effective name⁵⁾

NCBI BLAST name: spirochetes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema

Entrez records
Database name	Subtree links	Direct links
Nucleotide	6,009	1,307
Protein	530,421	417,392
Structure	44	22
Genome	1	1
Popset	81	51
Conserved Domains	7	4
GEO Datasets	10	10
PubMed Central	9,444	9,429
Gene	14,270	1
SRA Experiments	4,410	2,363
Protein Clusters	795	795
Identical Protein Groups	25,447	22,449
BioProject	96	30
BioSample	4,067	1,900
Assembly	790	663
Genetic Testing Registry	1	1
PubChem BioAssay	4	4
Taxonomy	15	1

Notes:

1) The type strain for this name is currently not available from a recognized culture collection.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

image:Treponema pallidum

Schaudinn F (1905)

Schaudinn, F. "Korrespondenzen." Deutsche Medizinische Wochenschrift (1905) 31:1728. [No PubMed record available.]

Schaudinn F & Hoffmann E (1905)

Schaudinn, F., and Hoffmann, E. "Vorlaufiger Bericht uber das Vorkommen for Spirochaeten in syphilitischen Krankheitsprodukten und bei Papillomen." Arbeiten aus dem Kaiserlichen Gesundheitsamte (Berlin) (1905) 22:528-534. [No PubMed record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Treponema pallidum (Schaudinn and Hoffmann 1905) Schaudinn 1905 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
2500901752: Treponema pallidum HMP	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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