www.fgks.org   »   [go: up one dir, main page]

A browser with JavaScript enabled is required for this page to operate properly.
NCBI VAST+ Logo
5VOI
X-ray crystal structure of bacterial RNA polymerase and pyrG promoter complex
Biological unit 1: octameric
Source organism: Thermus thermophilus HB8, ▼
Taxonomy
close
Number of proteins:
6 (DNA-directed RNA polymerase subunit alpha, DNA-... )
Protein molecule
close
AA -Click to explore this molecule neighborsBB -Click to explore this molecule neighbors
DNA-directed RNA polymerase subunit alpha
CC -Click to explore this molecule neighbors
DNA-directed RNA polymerase subunit beta
DD -Click to explore this molecule neighbors
DNA-directed RNA polymerase subunit beta'
EE -Click to explore this molecule neighbors
DNA-directed RNA polymerase subunit omega
FF -Click to explore this molecule neighbors
RNA polymerase sigma factor SigA
Number of nucleotides:
2 (PyrG promoter )
Number of chemicals:
5 (MAGNESIUM ION (3),ZINC ION (2) )
Similar Structures (497)help
helphelp
help
Showing 1 to 10 out of 497 selected structures help
      PDB ID Description Taxonomy Aligned Protein RMSD Aligned Residues Sequence Identity
1
Expand row
Partial
6P70
X-ray crystal structure of bacterial RNA polymerase and pyrBI promoter complex
Thermus thermophilus/Escherichia coli
6 0.58Å 3485 100%
2
Expand row
Partial
5D4E
Crystal structure of Thermus thermophilus product complex for transcription initiation with 3'-dephosphate-CoA and CTP
Thermus thermophilus/Thermus thermophilus HB27/Thermus thermophilus HB8
6 0.75Å 3484 100%
3
Expand row
Partial
4OIQ
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077 and rifampicin
Others
6 0.53Å 3483 100%
4
Expand row
Partial
4OIR
Crystal structure of Thermus thermophilus RNA polymerase transcription initiation complex soaked with GE23077 and rifamycin SV
Others
6 0.56Å 3483 100%
5
Expand row
Partial
4G7H
Crystal structure of Thermus thermophilus transcription initiation complex
Others
6 0.58Å 3483 100%
6
Expand row
Partial
4Q4Z
Thermus thermophilus RNA polymerase de novo transcription initiation complex
Others
6 0.59Å 3483 100%
7
Expand row
Partial
6L74
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 2 nt
Others
6 0.42Å 3482 100%
8
Expand row
Partial
4OIN
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077
Others
6 0.44Å 3482 100%
9
Expand row
Partial
4OIP
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077, ATP, and CMPcPP
Others
6 0.45Å 3482 100%
10
Expand row
Partial
6KQL
Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 4 nt
Others
6 0.51Å 3482 99%
First PreviousofPagesNext Last
{"1":"DNA-directed RNA polymerase subunit alpha","2":"DNA-directed RNA polymerase subunit alpha","3":"DNA-directed RNA polymerase subunit beta","4":"DNA-directed RNA polymerase subunit beta'","5":"DNA-directed RNA polymerase subunit omega","6":"RNA polymerase sigma factor SigA"}
Citing VAST
Thomas Madej, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Stephen H Bryant "Biological Assembly Comparison With VAST" Methods Mol. Biol. 2020(2112):175-186
X
?Original VAST
Original VAST finds structures that are similar to individual protein molecules, or individual 3D domains, in your query structure. Select a protein molecule ("chain") or 3D domain of interest from the table below to view a list of other proteins or domains that have a similar 3D shape. In contrast to VAST+, which focuses on the default biological unit, Original VAST lists all protein molecules in the asymmetric unit of the query structure.