Breeding

Amplified fragment-length polymorphism (AFLP) was used to evaluate the stability of DNA in regenerated plantlets of Coffea arabica obtained by direct (DSE) and indirect somatic embryogenesis (ISE). Cluster analysis using the unweighted pair-group method (UPGMA), showed no specific grouping pattern related to the type of embryogenesis. These results suggest that the somatic embryogenesis (SE) process has a mechanism for the selection of normal and competent cells. Bulked DNA from regenerated plants obtained by DSE and ISE, and from the mother plants, was used to characterize specific AFLP fragments associated with each SE process. Twenty-three primer combinations were tested. A total of 1446 bands were analyzed, with 11.4% being polymorphic and 84% being specific for regenerated plants. Furthermore, specific bands were detected for DSE, ISE, and the mother plants. These results indicate that the SE process induces rearrangements at the DNA level and demonstrates discrepancies between the mechanisms involved in each SE process. Coffea arabica breeding programs that involve DSE and ISE can use AFLP as an additional tool for assessing DNA stability.

Oocyte transfer is a potential method to produce offspring from valuable mares that cannot carry a pregnancy or produce embryos. From 2000 through 2004, 86 mares, 19.2 +/- 0.4 yr of age (mean +/- S.E.M.), were used as oocyte donors in a clinical program at Colorado State University. Oocytes were collected from 77% (548/710) of preovulatory follicles and during 96% (548/570) of cycles. Oocytes were collected 21.0+/-0.1h after administration of hCG to estrous donors and cultured 16.4 +/- 0.2 h prior to transfer into recipients' oviducts. At 16 and 50 d after transfer, pregnancies were detected in 201 of 504 (40%) and 159 of 504 (32%) of recipients, respectively, with an embryo-loss rate of 21% (42/201). Pregnancy rates were similar (P > 0.05) for cyclic and noncyclic recipients and for recipients inseminated with cooled, fresh or frozen semen. One or more recipients were detected pregnant at 16 and 50 d, respectively, for 80% (69/86) and 71% (61/86) of donors. More donors <2...

Huangzaosi, Qi319, and Ye478 are foundation inbred lines widely used in maize breeding in China. To elucidate genetic base of yield components and kernel-related traits in these elite lines, two F2:3 populations derived from crosses Qi319 × Huangzaosi (Q/H, 230 families) and Ye478 × Huangzaosi (Y/H, 235 families), as well as their parents were evaluated in six environments including Henan, Beijing, and Xinjiang in 2007 and 2008. Correlation and hypergeometric probability function analyses showed the dependence of yield components on kernel-related traits. Three mapping procedures were used to identify quantitative trait loci (QTL) for each population: (1) analysis for each of the six environments, (2) joint analysis for each of the three locations across 2 years, and (3) joint analysis across all environments. For the eight traits measured, 90, 89, and 58 QTL for Q/H, and 72, 76, and 51 QTL for Y/H were detected by the three QTL mapping procedures, respectively. About 70% of the QTL from Q/H and 90% of the QTL from Y/H did not show significant QTL × environment interactions in the joint analysis across all environments. Most of the QTL for kernel traits exhibited high stability across 2 years at the same location, even across different locations. Seven major QTL detected under at least four environments were identified on chromosomes 1, 4, 6, 7, 9, and 10 in the populations. Moreover, QTL on chr. 1, chr. 4, and chr. 9 were detected in both populations. These chromosomal regions could be targets for marker-assisted selection, fine mapping, and map-based cloning in maize.

Retrotransposon segments were characterized and inter-retrotransposon amplified polymorphism (IRAP) markers developed for cultivated flax (Linum usitatissimum L.) and the Linum genus. Over 75 distinct long terminal repeat retrotransposon segments were cloned, the first set for Linum, and specific primers designed for them. IRAP was then used to evaluate genetic diversity among 708 accessions of cultivated flax comprising 143 landraces, 387 varieties, and 178 breeding lines. These included both traditional and modern, oil (86), fiber (351), and combined-use (271) accessions, originating from 36 countries, and 10 wild Linum species. The set of 10 most polymorphic primers yielded 141 reproducible informative data points per accession, with 52% polymorphism and a 0.34 Shannon diversity index. The maximal genetic diversity was detected among wild Linum species (100% IRAP polymorphism and 0.57 Jaccard similarity), while diversity within cultivated germplasm decreased from landraces (58%, 0.63) to breeding lines (48%, 0.85) and cultivars (50%, 0.81). Application of Bayesian methods for clustering resulted in the robust identification of 20 clusters of accessions, which were unstratified according to origin or user type. This indicates an overlap in genetic diversity despite disruptive selection for fiber versus oil types. Nevertheless, eight clusters contained high proportions (70–100%) of commercial cultivars, whereas two clusters were rich (60%) in landraces. These findings provide a basis for better flax germplasm management, core collection establishment, and exploration of diversity in breeding, as well as for exploration of the role of retrotransposons in flax genome dynamics.

Weight and growth data on 5,136 lambs, from 104 sires and 1,552 dams were collected during 5 yr (13 lambing seasons) of selection for high weaning weight in a single flock under range conditions. Ewes were culled based on fertility and replaced by ewe lambs selected for high weaning weight. Heritabilities of birth weight, weaning weight (30 d), preweaning daily gain, postweaning daily gain, and weight at 90 d, respectively, were .13, .09, .03, .15, and .11. Genetic correlations were generally high. Genetic and phenotypic improvements of weaning weight were 22 +/- 3.0 and 198 +/- 11.3 g per lambing season, respectively, with three lambing seasons per year. At the end of the experiment, phenotypic mean weaning weight was 2.4 kg higher than the initial values. Estimated and theoretical responses were similar in the sire population. At the 13th lambing season, average breeding value of 30-d weight of the ram population was 600 g higher than the mean initial breeding value in the base po...

High levels of environmental contaminants such as polychlorinated biphenyls (PCBs), organochlorine pesticides (OCPs) and mercury (Hg) have been reported in some Arctic top predators such as seabirds. Chronic exposure to these contaminants might alter the response to environmental changes through interference with the regulation of corticosterone (CORT), a glucocorticoid stress hormone released by the hypothalamo-pituitary-adrenal (HPA) axis. Positive and negative relationships between CORT and environmental contaminants have been reported in polar seabirds. However, patterns appear inconclusive and it is difficult to attribute these relationships to a dysfunction of the HPA axis or to other confounding effects. In order to explore the relationships between the HPA axis activity and contaminants, we tested whether different aspects of the HPA axis of an Arctic seabird, the black-legged kittiwakes Rissa tridactyla, would be related to blood Hg, PCB and OCP concentrations. Male kittiwa...

BACKGROUND: Urbanization has a great impact on the composition of the vector system and malaria transmission dynamics. In Dakar, some malaria cases are autochthonous but parasite rates and incidences of clinical malaria attacks have been recorded at low levels. Ecological heterogeneity of malaria transmission was investigated in Dakar, in order to characterize the Anopheles breeding sites in the city and

Horn fly population density on 215 beef cows representing seven breed groups and 51 sires was used to obtain estimates of repeatability (rXX) and heritability (h2) for resistance to the horn fly (Haematobia irritans [L.] Diptera: Muscidae). Total horn fly densities were determined weekly on each cow beginning in May and ending in late October or early November of 1988, 1989, and 1990. No insecticides were used on cattle in this study. Estimates of h2 for horn fly resistance (low horn fly number per cow) were obtained by the paternal half-sib method (4 sigma 2S) and as twice the intrasire regression of offspring on dam (2bDD/S). Variance component estimates were obtained using a completely nested ANOVA that included overall mean, breed, sire/breed, cow/sire, and residual error. One hundred twenty-six daughter-dam pairs were available for regression analysis. In a preliminary analysis, the within-breed regression was nonsignificant (P greater than .05), implying that the regression wa...

Legendre polynomial and cubic spline functions were used in random regression models to model the change in body traits over the course of the first lactation for daughters of 954 sires. Both functions estimated similar genetic variances for d 50 to 250 across lactation for the majority of traits. The heritability of the traits was similar to other studies using univariate models as well as random regression models. There was little difference between the 2 functions in their predictive power for each of the body type traits, as measured by the absolute difference between the predicted and actual type traits and the proportion of the total phenotypic variance explained by the model. Overall, the Legendre polynomial appeared to model these traits slightly better. Plots of the fixed curves and daily sire solutions obtained from the random regression models showed that there were differences in how the traits and sires changed across lactation. The daily sire solutions were then used t...

Some dairy cattle breeders believe that dairy cows with high pin bones will have poorer fertility. The aim of this study was to examine this claim by investigating the relationships, both genetic and phenotypic, between fertility, rump angle, and other selected type traits in first-lactation Holstein-Friesians. Results showed an unfavorable genetic correlation (-0.16) between calving interval and rump angle, suggesting that animals with high pin bones would have a longer calving interval. However, no significant genetic or phenotypic correlation between days to first service and nonreturn rate and rump angle was observed. No evidence of a relationship, linear or quadratic, between any fertility trait and rump angle was found. Udder support and mammary system were unfavorably correlated to calving interval (0.25 and 0.14, respectively), suggesting that cows with more functional udders would have a longer calving interval. Legs and feet score was favorably correlated to nonreturn rate...

Poor fertility has become a major reason for involuntary culling of dairy cows in the United Kingdom. Calving interval (CI) and body condition score (BCS) are recorded, heritable, genetically correlated with each other, and could be used to extend the scope of dairy indices to include fertility traits. The use of U.K. insemination information for the evaluation of fertility has not been examined previously. Fertility and correlated traits were examined using nationally recorded milk (MILK = daily milk yield at test nearest d 110), BSC, and fertility traits (CI and the insemination traits of nonreturn rate after 56 d, NR56; days to first service, DFS; and number of inseminations per conception, INS). Genetic parameters for the traits were estimated simultaneously with a multitrait sire maternal grandsire (MGS) model and a multitrait BLUP sire MGS model was used to predict sire predicted transmitting abilities for each trait. The relationship between the fertility traits and other pre...