NCBI - National Center for Biotechnology Information/NLM/NIH

Repositories

• vadr

  Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
  Perl 10 30 2 0 Updated Mar 3, 2021

• ngs-tools
  C++ 21 62 9 2 Updated Mar 2, 2021

• sra-tools

  SRA Tools
  C 165 520 55 1 Updated Mar 2, 2021

• ncbi-vdb

  ncbi-vdb
  C 30 70 8 0 Updated Mar 2, 2021

• ngs

  NGS Language Bindings
  C++ 51 110 8 1 Updated Mar 2, 2021

• ncbi-vdb3
  6 1 0 0 Updated Mar 2, 2021

• datasets

  NCBI Datasets is an experimental resource for finding and building datasets
  12 51 2 0 Updated Mar 2, 2021

• cxx-toolkit
  HTML 36 13 0 0 Updated Feb 27, 2021

• igblast

  Forked from tom6931/igblast
  Ruby 7 4 0 0 Updated Feb 26, 2021

• ncbi-oauth

  OAuth 2 and JWT
  4 1 0 0 Updated Feb 25, 2021

• pm4ngs

  Project Manager for NGS data analysis

  bioinformatics next-generation-sequencing rnaseq ngs-analysis ngs-pipeline cwl-workflow chipseq
  Python 5 13 0 0 Updated Feb 24, 2021

• sra-human-scrubber

  An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be used for SRA submission.
  0 1 0 0 Updated Feb 23, 2021

• amr

  amr_finder
  C++ 15 61 3 0 Updated Feb 23, 2021

• elastic-blast-docs

  ElasticBLAST documentation
  3 0 0 0 Updated Feb 23, 2021

• SRPRISM
  C++ 4 2 0 0 Updated Feb 22, 2021

• dbvar

  dbVar

  structural variation dbvar
  11 33 6 0 Updated Feb 20, 2021

• elastic-blast-demos

  ElasticBLAST demos
  Shell 0 0 0 0 Updated Feb 16, 2021

• gaptools

  dbGaP data validation tool repo
  Shell 5 4 0 0 Updated Feb 16, 2021

• icn3d

  WebGL-based protein structure viewer

  nodejs delphi webgl jupyter-notebook chemical protein snp
  JavaScript 26 66 0 0 Updated Feb 12, 2021

• ncbi-logging

  Log monitoring and gathering infrastructure to feed analytics
  C++ 5 3 0 0 Updated Feb 10, 2021

• biomedical-citation-selector
  Python 6 4 0 1 Updated Feb 8, 2021

• rapt

  Read Assembly and Annotation Pipeline Tool

  ngs genome-annotation pgap annotation-pipeline skesa
  10 24 5 0 Updated Feb 5, 2021

• ribovore
  Perl 0 3 0 0 Updated Feb 4, 2021

• osiris

  OSIRIS is a public domain quality assurance software package that facilitates the assessment of multiplex short tandem repeat (STR) DNA profiles based on laboratory-specific protocols. OSIRIS evaluates the raw electrophoresis data contained in .fsa or .hid files using an independently derived mathematically-based sizing algorithm. OSIRIS current…
  C++ 22 17 0 0 Updated Feb 1, 2021

• SKESA

  SKESA assembler
  C++ 9 61 7 1 Updated Feb 1, 2021

• ncbi-drs

  GA4GH DRS Service
  Python 7 1 4 1 Updated Jan 26, 2021

• docker
  C++ 26 31 0 0 Updated Jan 25, 2021

• dbsnp

  dbSNP

  bioinformatics database genomics variations ncbi
  Jupyter Notebook 28 67 1 0 Updated Jan 25, 2021

• pgap

  NCBI Prokaryotic Genome Annotation Pipeline
  Common Workflow Language 47 127 6 0 Updated Jan 22, 2021

• cwl-ngs-workflows-cbb

  A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

  ngs ngs-analysis ngs-pipeline cwl-workflow
  Common Workflow Language 6 17 0 0 Updated Jan 21, 2021