NCBI SRA Toolkit

Please consult SRA Toolkit Documentation for help.
Below are the latest releases of various tools and release checksum file.

SRA Toolkit

Compiled binaries of July 24, 2018, version 2.9.2 release:

• CentOS Linux 64 bit architecture
• Ubuntu Linux 64 bit architecture
• MacOS 64 bit architecture
• MS Windows 64 bit architecture

Magic-BLAST

Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.

• Magic-BLAST executables for LINUX, MacOSX, and Windows as well as the source files are available on the FTP site
• Read more about Magic BLAST on the FTP site

Third Party Software

Builds of Third Party Software Tools with SRA support ( NGS 2.9.2 release ):

• Genome Analysis Toolkit (GATK) version 3.6-6-ngs.2.9.2 - including direct support of SRA
• HISAT2 version 2.1.0-ngs.2.9.2 - graph-based alignment of next generation sequencing reads to a population of genomes with direct support of SRA, built for Linux 64 bit architecture

Latest Source Code

• NGS Software Development Kit – July 24, 2018, version 2.9.2 release
• NCBI VDB Software Development Kit – July 24, 2018, version 2.9.2 release
• NCBI SRA Toolkit – July 24, 2018, version 2.9.2 release

File checksums

You may validate downloaded files with md5 checksums computed using md5sum -b