Basic Local Alignment Search Tool
BLAST finds regions of similarity between biological sequences. The program compares nucleotide or
protein sequences to sequence databases and calculates the statistical
significance.
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The Basic Local Alignment Search Tool (BLAST) finds regions of local
similarity between sequences. The program compares nucleotide or
protein sequences to sequence databases and calculates the statistical
significance of matches. BLAST can be used to infer functional and
evolutionary relationships between sequences as well as help identify
members of gene families.
News
- Introducing: Magic-BLAST
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Wed, 24 Aug 2016 11:00:00 EST
Magic-BLAST is a new tool for mapping large sets of next-generation RNA or DNA sequencing runs against a whole genome or transcriptome.
Web BLAST
Standalone and API BLAST
Specialized searches
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SmartBLASTFind proteins highly similar to your query
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Primer-BLASTDesign primers specific to your PCR template
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Global AlignCompare two sequences across their entire span (Needleman-Wunsch)
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CD-searchFind conserved domains in your sequence
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GEOFind matches to gene expression profiles
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IgBLASTSearch immunoglobulins and T cell receptor sequences
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VecScreenSearch sequences for vector contamination
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CDARTFind sequences with similar conserved domain architecture
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Targeted LociSearch markers for phylogenetic analysis
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Multiple AlignmentAlign sequences using domain and protein constraints
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BioAssaySearch protein or nucleotide targets in PubChem BioAssay
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MOLE-BLASTEstablish taxonomy for uncultured or enviromental sequences