www.fgks.org   »   [go: up one dir, main page]

Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy Books
   
Taxonomy browser (Rattus norvegicus)

Rattus norvegicus

Taxonomy ID: 10116
Genbank common name: Norway rat
Inherited blast name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
common name: rats
common name: rat
common name: brown rat
includes: zitter rats
includes: laboratory rat
includes: Wistar rats
includes: Sprague-Dawley rat
includes: Rattus PC12 clone IS
includes: Buffalo rat
misnomer: Rattus rattiscus
misnomer: Gunn rats
equivalent name: Rattus sp. strain Wistar
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 321,594 321,593
Nucleotide EST 1,103,594 1,103,594
Nucleotide GSS 867,131 867,131
Protein 143,914 143,914
Structure 2,341 2,341
Genome 1 1
Popset 170 170
SNP 5,000,528 5,000,528
Domains 1 1
GEO Datasets 76,144 76,138
UniGene 67,297 67,297
PubMed Central 7,502 7,502
Gene 96,491 96,491
HomoloGene 18,871 18,871
SRA Experiments 6,534 6,486
Probe 330,205 330,205
Assembly 14 14
Bio Project 2,179 2,176
Bio Sample 17,720 17,684
Bio Systems 2,025 2,025
Clone DB 482,767 482,767
GEO Profiles 6,203,017 6,203,017
PubChem BioAssay 391,714 391,714
Protein Clusters 13 13
Taxonomy 2 1

Comments and References:

Note: The laboratory rat Rattus norvegicus is occassionally misidentified as Rattus rattus. A certain number of the R. rattus sequence records are therefore likely to be from R. norvegicus.

Sequence entries that are identified only by the English vernacular name "rats" are classified with "Rattus sp." Many of these entries are journal-scanned sequences from articles in which the scientific name of the organism does not appear (this is an editorial policy for model organisms in some journals). Most of these sequences are likely to be from Rattus norvegicus. If you want to make sure that you have all of the records for R. norvergicus, you should also retrieve the records for Rattus rattus and Rattus sp.


Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Rattus norvegicus
Genome view: 21 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 X
See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND EST FINISHING PCR PRIMERWALK RT-PCR SHOTGUN WGS ALL
ABC - Agencourt Bioscience Corporation
- 143,327 - - - - 155,599 5,584,764 5,883,690
BCM - Baylor College of Medicine
- - - - - - 15,144,234 4,392,883 19,537,117
BI - Broad Insititute
- - - - - - 4,608 - 4,608
CRA - Celera Genomics
- - - - - - - 23,772,713 23,772,713
GBF - German Research Centre for Biotechnology
- - - - - - 40,854 - 40,854
HPGC - Albert Einstein College of Medicine
- - 5,772 - - - 19,527 - 25,299
IMBGA - Institute of Molecular Biotechnology Genome Analysis
- - - - - - 83,500 119,257 202,757
MPIMG - Max Planck Institute for Molecular Genetics
- - - - - - - 158,061 158,061
NISC - NIH Intramural Sequencing Center
- - - - - - 492,073 - 492,073
PSU - Penn State College of Medicine
- - - 69 - - - - 69
SC - The Sanger Center
- - - 121 450 - - - 571
TIGR - The Institute for Genome Research
680 - - - - - 361,862 - 362,542
UIACBCB - University of Iowa Center for Bioinformatics and Computation Biology (UIACBCB)
- 347,282 - - - - - - 347,282
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - 134 - - - 16,792 - 16,926
UUGC - University of Utah Genome Center
- - - - - - - 1,049,963 1,049,963
WU-LCG - Washington University Laboratory for Computational Genomics
- - - - - 911 - - 911
Totals per type
680 490,609 5,906 190 450 911 16,319,049 35,077,641 51,895,436

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Rattus norvegicus taxonomy/phylogenetic Animal Diversity Web
Rattus norvegicus taxonomy taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Rattus norvegicus taxonomy/phylogenetic Barcodes of Life
Rattus norvegicus taxonomy/phylogenetic CalPhotos
dryaddb supplemental materials Dryad Digital Repository
dryaddb supplemental materials
dryaddb supplemental materials
dryaddb supplemental materials
dryaddb supplemental materials
dryaddb supplemental materials
dryaddb supplemental materials
dryaddb supplemental materials
Rattus norvegicus (Berkenhout, 1769) taxonomy/phylogenetic Encyclopedia of life
GOLDCARD: Gi0062537 organism-specific Genomes On Line Database
GOLDCARD: Gi02169 organism-specific
GOLDCARD: Gi02168 organism-specific
GOLDCARD: Gi02167 organism-specific
GOLDCARD: Gi0073813 organism-specific
GOLDCARD: Gi02171 organism-specific
GOLDCARD: Gi02170 organism-specific
GOLDCARD: Gi06620 organism-specific
GOLDCARD: Gi07094 organism-specific
GOLDCARD: Gi07092 organism-specific
GOLDCARD: Gt0013044 organism-specific
GOLDCARD: Gi0044916 organism-specific
GOLDCARD: Gi0044660 organism-specific
GOLDCARD: Gi0044661 organism-specific
GOLDCARD: Gi0044298 organism-specific
GOLDCARD: Gi0010505 organism-specific
GOLDCARD: Gi0062538 organism-specific
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639431600: Rattus norvegicus BN/SsNHsdMCW organism-specific Integrated Microbial Genomes
Rattus norvegicus (Berkenhout, 1769) taxonomy/phylogenetic Integrated Taxonomic Information System
Rattus norvegicus Berkenhout 1769 taxonomy/phylogenetic Mammal Species of the World
MamTex taxonomy/phylogenetic Mammals of Texas
RATMAP taxonomy/phylogenetic NCBI taxonomy bookmarks
Rat Genome Database (Medical College of Wisconsin) taxonomy/phylogenetic
Rat Genome Data (Jackson Lab) taxonomy/phylogenetic
rat strains (BAC proposal) taxonomy/phylogenetic NHGRI genome proposal white papers
rat Trans-NIH Model Organism Initiative
Rattus norvegicus taxonomy/phylogenetic TreeBase
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
WebScipio: Rattus norvegicus organism-specific WebScipio - eukaryotic gene identification
WebScipio: Rattus norvegicus BN/SsNHsdMCW organism-specific
diArk: Rattus norvegicus WKY/Bbb organism-specific diArk a resource for eukaryotic genome research
diArk: Rattus norvegicus SHRSP/Bbb organism-specific
diArk: Rattus norvegicus SS/JrNhsd organism-specific
diArk: Rattus norvegicus BN/SsNHsdMCW organism-specific
diArk: Rattus norvegicus BN/Sprague-Dawley organism-specific
diArk: Rattus norvegicus GK/Ox organism-specific
diArk: Rattus norvegicus organism-specific
Wikipedia taxonomy/phylogenetic iPhylo
BBC Wildlife Finder taxonomy/phylogenetic
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.
To see LinkOut links in this lineage click here

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]