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Taxonomy browser (Chlamydomonas reinhardtii)

Chlamydomonas reinhardtii

Taxonomy ID: 3055
Inherited blast name: green algae
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Other names:
synonym: Chlamydomonas smithii
includes: Chlamydomonas reinhardtii strain CC-1373
authority: Chlamydomonas smithii R.W.Howshaw & H.Ettl
authority: Chlamydomonas reinhardtii P.A.Dangeard
type material: UTEX 90
type material: SAG 54.72 [[Chlamydomonas smithii]]
type material: SAG 53.72 [[Chlamydomonas smithii]]
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
   Entrez records   
Database name Subtree links Direct links
Nucleotide 25,041 25,041
Nucleotide EST 204,076 204,076
Nucleotide GSS 35,569 35,569
Protein 32,082 32,082
Structure 121 121
Genome 1 1
Popset 72 72
Domains 2 2
GEO Datasets 893 893
UniGene 7,577 7,577
PubMed Central 6,240 6,240
Gene 14,490 14,490
SRA Experiments 1,078 1,078
Probe 349 349
Assembly 2 2
Bio Project 95 95
Bio Sample 1,017 1,017
Bio Systems 570 570
PubChem BioAssay 10 10
Protein Clusters 2,477 2,477
Taxonomy 2 1

Comments and References:

Nota BeneProeschold T et al. 2005
Proeschold T, Harris EH, Coleman AW. 2005. Portrait of a species: Chlamydomonas reinhardtii. Genetics. 170(4): 1601-1610.

Reference to PubMed documentNozaki H et al. 2002
Nozaki H, Onishi K, Morita E. 2002. Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae). Journal of Molecular Evolution. 55(4): 414-30.

Proeschold T et al. 2001
Proeschold T, Marin B, Schloesser UG and Melkonia M. 2001. Molecular phylogeny and taxonomic revision of Chlamydomonas (Chlorophyta). I. Emendation of Chlamydomonas Ehrenberg and Chloromonas Gobi, and description of Oogamochlamys gen. nov. and Lobochlamys gen. nov. Protist 152: 265-300.

Hoshaw RW & Ettl H 1966
Hoshaw RW and Ettl H. 1966. Chlamydomonas smithii sp. nov. - a chlamydomonad interfertile with Chlamydomonas reinhardtii. Journal of Phycology 2: 93-96.


Genome Information

Go to NCBI genomic BLAST page for Chlamydomonas reinhardtii
Genome view: 17 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND EST FINISHING SHOTGUN WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
19,995 45,312 - - 2,749,100 2,814,407
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - 223 13,662 - 13,885
Totals per type
19,995 45,312 223 13,662 2,749,100 2,828,292

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
dryaddb supplemental materials Dryad Digital Repository
Chlamydomonas reinhardtii P. A. Dangeard taxonomy/phylogenetic Encyclopedia of life
GOLDCARD: Gt0022882 organism-specific Genomes On Line Database
GOLDCARD: Gt00136 organism-specific
GOLDCARD: Gt00135 organism-specific
GOLDCARD: Gt00138 organism-specific
GOLDCARD: Gt00142 organism-specific
GOLDCARD: Gt0015105 organism-specific
GOLDCARD: Gt0015106 organism-specific
GOLDCARD: Gt00156 organism-specific
GOLDCARD: Gt00176 organism-specific
GOLDCARD: Gt0022885 organism-specific
GOLDCARD: Gt00131 organism-specific
GOLDCARD: Gt0022884 organism-specific
GOLDCARD: Gt0022883 organism-specific
GOLDCARD: Gt0042764 organism-specific
GOLDCARD: Gt0058514 organism-specific
GOLDCARD: Gt0058515 organism-specific
GOLDCARD: Gt0058598 organism-specific
GOLDCARD: Gt00137 organism-specific
GOLDCARD: Gi0000198 organism-specific
GOLDCARD: Gi0010021 organism-specific
GOLDCARD: Gi0043457 organism-specific
GOLDCARD: Gi0044286 organism-specific
GOLDCARD: Gi0045169 organism-specific
GOLDCARD: Gi0063501 organism-specific
GOLDCARD: Gi0063500 organism-specific
GOLDCARD: Gi0070988 organism-specific
GOLDCARD: Gi0073481 organism-specific
GOLDCARD: Gi13847 organism-specific
GOLDCARD: Gt0012710 organism-specific
GOLDCARD: Gt0012709 organism-specific
GOLDCARD: Gt00130 organism-specific
GOLDCARD: Gt00134 organism-specific
Chlamydomonas reinhardtii culture/stock collections Global Catalogue of Microorganisms
649410502: Chlamydomonas reinhardtii CC-503 cw92 mt+ organism-specific Integrated Microbial Genomes
Chlamydomonas reinhardtii Dangeard, 1899 taxonomy/phylogenetic Integrated Taxonomic Information System
EST Index clones/clone libraries Kazusa DNA Research Institute
Chlamydomonas Resource Center taxonomy/phylogenetic NCBI taxonomy bookmarks
Chlamydomonas Genome Project taxonomy/phylogenetic
Chlamydomonas reinhardtii (taxon passport) culture/stock collections StrainInfo
Chlamydomonas reinhardtii taxonomy/phylogenetic TreeBase
WebScipio: Chlamydomonas reinhardtii organism-specific WebScipio - eukaryotic gene identification
diArk: Chlamydomonas reinhardtii organism-specific diArk a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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