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cd01662: Ubiquinol_Oxidase_I 
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Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.
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Statistics
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PSSM-Id: 238832
View PSSM: cd01662
Aligned: 42 rows
Threshold Bit Score: 613.819
Threshold Setting Gi: 16264696
Created: 15-Sep-2005
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
Hierarchy
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Display:
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Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Putative ubiquinol binding site [chemical binding site]
Evidence:
  • Structure:1FFT_F: putative ubiquinol binding site
    View structure with Cn3D
  • Comment:Proposed as ubiquinol binding site by authors of 1FFT structure paper, but none of these residues is highly conserved.

cd01662 is part of a hierarchy of related CD models.
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cd01662 is a member of the superfamily cl00275.
cd00919:Heme_Cu_Oxidase_Icd01660:ba3-like_Oxidase_Icd01661:cbb3_Oxidase_Icd01662:Ubiquinol_Oxidase_Icd01663:Cyt_c_Oxidase_I51893235441609423102975564755201626469656478012324730924619335013488474229888566792642622989373679295261561018025028974854694550842190509551292847625274043462309889310175235464512492443422309970949239296567074364644682454296266295416161FFT F13469402110741030351178336002704613132220378344500855114757564813475707456842542737782651893235441609423102975564755201626469656478012324730924619335013488474229888566792642622989373679295261561018025028974854694550842190509551292847625274043462309889310175235464512492443422309970949239296567074364644682454296266295416161FFT F134694021107410303511783360027046131322203783445008551147575648134757074568425427377826
cd01662 Sequence Cluster
cd01662 Sequence Cluster
Sub-family Hierarchy
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 cd01662 Branch
 Whole Hierarchy
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CD Hierarchy
Sequence Alignment?
Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                              #   #  ##                  #  ###                        
1FFT_F       48 WLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALAsageagflpphHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127
gi 23102975 138 ALSAVNHSSIGLRFMVTGTLFFLIGGLLAMLLRVQLARPdlpl---idprTYSQLFTMHGSVMMFLFAVPMVEGLAVYLI 214
gi 56475520  25 AATIVNHTRIGLLFLLTGLGFFIFGGLLAMLIRAQLALPdqtf---mdadTYNQVFTMHGTVMMFLFAVPMMEGLAVYLI 101
gi 16264696  30 LVTAVNNTVIGLLYLGVAFLFFLMAGLLAVVMRTQLALGdnrl---vdqdLYNQMFTVHGTTMMFLFAVPAVEALGVMLL 106
gi 56478012  92 AVTVINNNYIGVFYVGAAFLFFVLAGIVALMMRTQLAVAendf---igpaLYNQLFTMHGTVMMFLFAVPAVEAMGILLL 168
gi 32473092  21 YWSAVNNSEVGLWYTLTAFGFFLFGGVLALIMRVQLALPdndw---ltpdQYNQIFTMHGSVMMFLFAVPILEAISIMLL 97
gi 46193350  30 YWSAVNNTEVGVWYALTALAFMLCAGVLALLMRVQLAVPhndf---lsadRFNQFFTMHGSAMMFLFAVPMFEAISIILL 106
gi 13488474  23 ALSTVDHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPearf---igpdRYNQIFTMHGSNMMFLFAVPVMQAMAIYLV 99
gi 67926426  30 WLSETNHKEIGRRYILTAFVFLLMGGVEALLMRLQLAKPentf---lsagRYNQIFTLHGTTMMFLFAVPVMEGMGVYLV 106
gi 22988856  43 WFSAIDHKIIARRFMVTTFVFFVLAGLMALVMRTQLARPashv---vgpdMYDQLFTIHGTAMMFLFAVPVMQAVAMYLI 119
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                                       
1FFT_F      128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGefaqTGWLAYPPLSGieyspgvGVDYWIWSLQLSGIGTTLTGIN 207
gi 23102975 215 PKMLGARDLVFPRLSAFGYWCYLFGGVILVSSLALGlapaGGWFMYVPLSGdahspgvNPDFWLLGITFVEISSVAGGIE 294
gi 56475520 102 PKMLGARDLVFPRLSALGYWCYLFGGLILAASLFLElapdAGWFMYTPLSSlpyspgvNSDFWLLGITFVEISAVTAAVE 181
gi 16264696 107 PQMLAARDLPFPRLSAFAIWAYVVGGLVFFSTIFYDlapkGGWFMYPPLTLmeyspgdNADFWLLGIGFIEISAIAGAVE 186
gi 56478012 169 PNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGwapdGGWFMNPPLTTetyspgyNADFWLLGIGFIEISAIAGAIE 248
gi 32473092  98 PQMLGARDLPFPRLSAYGYWCFLIGGVFVCGSLFFGvgprGGWFMYPPMTTeyq-dgiGPDIWLLGLSFIEIASIAAAVE 176
gi 46193350 107 PSLLGARDLPFPRLSAYGYWCFLIGGVFVLGSILFDaaprSGWFMYPPLATqde--glGSDIWLLGLSFIEVASIAAAVE 184
gi 13488474 100 PLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDtgpdIGWFAYVPLSGpqyaagkRADIWAQMITFTEVSALAIAVE 179
gi 67926426 107 PLMIGTRNVAFPRLNAFGYWMYLAGGLLLYGSVLFNmipdAGWFAYPPLSGpqfspgkGVDVWAQMITFTEISALCVAVE 186
gi 22988856 120 PLLIGARSVAFPRMNAYAYWVFLFGGLTLFIAFLLGagprSGWFSYVPLAGpdyatgkGSDIWAQMITFTELAALLVAVV 199
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                                       
1FFT_F      208 FFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNd-mGGNMMMYINLIWAWGHPE 286
gi 23102975 295 LVVSILRSRAPGMSLDRMPLFAWYILVTGLMIVFGFPPLILGSILLELERAAGFAFFDVa-rGGDPLLWQHLFWLFGHPE 373
gi 56475520 182 LVVAILRARAPGMTLQHMPLYAWYILTMAMMIVLGFPPLILGSILLELERAAGMAFFDVa-rGGDPILWQHLFWLFGHPE 260
gi 16264696 187 IVVGALRTRPPGMSLAKMPIFAWTMLIFASMIMFAFPAVILATMMLEIERAFGWPFFTAa-lGGDPLLWQHLFWFFGHPE 265
gi 56478012 249 IIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPAVILATALLELERAFHWPFFAAh-lGGDPLLWQHLFWFFGHPE 327
gi 32473092 177 LIVGVLKCRPPGMRLNLIPLYAWYILVVAVMILFAFPPLIAGDLLMELERAMDWPFFDVe-rGGDPMLWQHLFWIFGHPE 255
gi 46193350 185 LIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEMERGFDWPFFDPe-rGGDPLLWQHLFWIFGHPE 263
gi 13488474 180 IVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVGTHFFNPa-eGGDVLLWQHLFWFFGHPE 258
gi 67926426 187 LIVTILKMRAPGMSLNRMPMYCWSMLVQSFMIIFAMPAVMLASTVFLLNDRTLGTHFVNpaeGGDPLLYQHVFWFFGHPE 266
gi 22988856 200 LITTILKMRAPGMSLNRMPLFAWATLVTQFMVIFAMPAVMLASTALILDRLVGTQFYNPs-lGGDVLLWQHLFWFFGHPE 278
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                                       
1FFT_F      287 VYILILPVFGVFSEIAATFSrKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAganVNAFFGITTMIIAIPTGVKIFNW 366
gi 23102975 374 VYIIFLPAAGIVSTLLPVFArRPAVGYRWLVLAVIGTGFLSFGLWVHHMFTVGIpllGQAFFSAASMLVAVPTGIQVFAW 453
gi 56475520 261 VYIIFLPAAGLVSTMLPVFArRPIVGYRWVVVAVLTTGFISFALWVHHMFTVGIphlAQAFFSAASMLVAIPTGVQVFSW 340
gi 16264696 266 VYIIFLPAAGLVSMMVPTMArTPLVGYHLIVVALIGTGFFSFGLWVHHMFTTGIpalSLAFFSAASMAVAVPSGIQVFSW 345
gi 56478012 328 VYIIFLPAAGMVSMIVPTMArTPLVGYRFVVLALVGTAFLSFGLWVHHMFTTGIpqlSLSFFQAASTAVAIPSGMQVFAW 407
gi 32473092 256 VYIVFLPSIALIAMMVPTFArTPMAGYGWIILAAVGTGFLSFGLWVHHMFTTGLpgiSIGIFSAASEAVAIPTGVQIFCF 335
gi 46193350 264 VYIIFLPSIALAAMIVPTAArTPIVGYSWIVLSAVGTGFISFGLWVHHMFTTGLpalSLGFFSAASEAVVIPTGIQLFAF 343
gi 13488474 259 VYIIFLPAVGMVSSIVATFTqRPVFGYLAMVMALIATGVLAFGLWVHHMFVAGLprlGESFFTASSMAIAVPAGLQIFCW 338
gi 67926426 267 VYIIFLPALGMISSILETHTrRHIFGYPALVLSLVGNGFIAFGLWVHHMFATGLpqiGEAYFTAASMMIAITSGVQIFCW 346
gi 22988856 279 VYLIFIPALGFMSSIIETFSrRPIFGYSAMVLALIATAFLAFGLWVHHMFATAVpdlGKTFFTAASVMIAVPSGIQIYCW 358
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                                       
1FFT_F      367 LFTMYQGRIVFh----SAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVfGCFAGMTYWWPK 442
gi 23102975 454 LATLWTGRPLFn----VPMLWLAGFLVIFVAGGLTGVMLALVPFDWQVHDTHFVVAHMHYVLVGGMLfPLVAGLYYWLPH 529
gi 56475520 341 LATLWLGRPVYh----VPMLWLFGFLVIFVAGGLTGVMLALVPFNWQVHDTQFVVAHLHYVLVGGMFfPLVAAVYYWLPH 416
gi 16264696 346 IATIAAGRERFri--tTASLFILGFLFIFTLGGLTGVMVAMVPFDHQVHDTYFVVAHFHYVLIGGFVfPLFAAIYYWMPL 423
gi 56478012 408 IATFARGRATGrvriaTPTLFILGFLFIFVLGGLTGVMVAVIPFDWQAHDSYFIVAHLHYVLVGGMVfPLFAAFYYWMPY 487
gi 32473092 336 IATLLVGRVQRn----ACLKFVLAGLATFIIGGLTGVMVAIAPFDYQAHDTYFIVGHLHYVLIGGTIfPIVAGFYYYYPF 411
gi 46193350 344 VATLMVGRVKMi----LPMLWIAGGLAVFTAGGLTGVMVAIAPFDWQVHDTYFIVAHLHYTLFGGMVfPVIAGVYYFYPV 419
gi 13488474 339 LATIWAGRPIFk----TPFLFVIGFIVVFVIGGLTGVMVASVPFDTQVHDTYFVVAHFHYVLVGGAVfPLLGAIYYWFPK 414
gi 67926426 347 LATLWSGRLRLt----AAVHFVLGFIFIFVMGGMTGVMLASIPLDLQTHDTFFVVAHFHYVLIGGALfPLFGGFHYWFPK 422
gi 22988856 359 LATLLTGRLNLk----PPLLFVLAFFFILVLGGMTGIMLGSVPLDLQVHDTYFVVAHLHYVLLGGAVfPLFGAFHYWFPK 434
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                                       
1FFT_F      443 AFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLsqqi-dpqFHTMLMIAASGAVLIALGILCLVIQMYVSIr 521
gi 23102975 530 FSGRLPSAQLGRWGFWLTFVGFNATFLVMHWTGLLGMPRRVytyqaglgWDLPNLVSSVGSFVMAMGVVMVLLDIGLHFr 609
gi 56475520 417 FSGRMPSPRLGRWGFWLVFGGFNLTFLVMHWTGLLGMPRRAytyapglgWDVPNLVSSIGSFIMAIGIATVLVDVLLHFr 496
gi 16264696 424 FSRRMLSERLGRWVFWLIFIGFNVTFLPMHLTGLRGMPRRVwtypgemgWDTLNLISTVGTYVLAVGVLVFLVDLAAKFr 503
gi 56478012 488 TSRQALSERLGRWVFGLMFVGFNITFFPMHFTGLAGMPRRVytyaagygWESLNFVSTVGAFMIAAGVLIFIIDVARRFr 567
gi 32473092 412 VTGKRLSERLGNITFWLMLIGFNVAFFPMHIAGLMGMPRRVytfpggmgFELPNLISSIGAFGLGAGFLVLLWDVFRPKg 491
gi 46193350 420 IAKKTLSERLGRWSFWLLFTGFNVTFLPMHLTGLKGMPRRVftypghvgWDWLNLVSTVGAFVMAAGFAVFVWDLLRPKr 499
gi 13488474 415 LTGRMMSETLGRWSFGLIFSGFNLTFFPMHILGLQGMPRRIytyqpempWSGLNMFISLSGIVLAAGFLLFFIDAIRSAr 494
gi 67926426 423 FTGRLIDETLGKLSFWILFVGFNLTFFPMHWLGIVGMTRRVytyvpglgWEQANLTATIGAFVILSGGVTFIANVLRSRr 502
gi 22988856 435 FTGRMLGERLAHWQFWLFFIGFNVTFFPMHLLGLHGMPRRVwtypagmgWDGMNLIATLGAYMIGVSVLLFIVNVVMSLr 514
                       490       500       510
                ....*....|....*....|....*....|.
Feature 1                                      
1FFT_F      522 drdqnrdltGDPWGgrTLEWATssppPFYNF 552
gi 23102975 610 fgr---ragDNPWRadSLEWATalppASYNF 637
gi 56475520 497 fgv---raaPNPWHadTLEWATrlppTAYNF 524
gi 16264696 504 lgn---gpqENPWGagTLEWLPn---DVYST 528
gi 56478012 568 msa--ednaGNVWQagTLEWLPn---GNYSN 593
gi 32473092 492 kqp---fvpRNIWNagTLEWSGevpdLPWGI 519
gi 46193350 500 ak----lseRNPWGagTLEWTHdledESWGV 526
gi 13488474 495 sgp---iapANPWGasTLEWATssppPSYNF 522
gi 67926426 503 sgk---ragSDPWDasTLEWETesppPPYNF 530
gi 22988856 515 hga---raaANPWGagTLEWSVpsapPPHNF 542

Citing CDD
Marchler-Bauer A et al. (2013), "CDD: conserved domains and protein three-dimensional structure.", Nucleic Acids Res. 41(D1):D384-52.
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Conserved site includes 8 residues -Click on image for an interactive view with Cn3D