Vertebrates
Mammals
Primates
Scientific name | Common name | Build | Tools |
---|---|---|---|
Callithrix jacchus | white-tufted-ear marmoset | Annotation Release 101 | |
Gorilla gorilla | western gorilla | Annotation Release 100 | |
Homo sapiens | human | Annotation Release 105 | |
Build 36.3 | |||
Macaca fascicularis | crab-eating macaque | Annotation Release 100 | |
Macaca mulatta | rhesus macaque | Build 1.2 | |
Nomascus leucogenys | northern white-cheeked gibbon | Annotation Release 101 | |
Build 1.1 | |||
Otolemur garnettii | small-eared galago | Annotation Release 100 | |
Pan paniscus | pygmy chimpanzee | Annotation Release 100 | |
Pan troglodytes | chimpanzee | Annotation Release 102 | |
Build 2.1 | |||
Papio anubis | olive baboon | Annotation Release 100 | |
Pongo abelii | Sumatran orangutan | Annotation Release 101 | |
Saimiri boliviensis | Bolivian squirrel monkey | Annotation Release 100 |
Rodents
Scientific name | Common name | Build | Tools |
---|---|---|---|
Cavia porcellus | domestic guinea pig | Annotation Release 101 | |
Chinchilla lanigera | long-tailed chinchilla | Annotation Release 100 | |
Cricetulus griseus | Chinese hamster | Build 1.1 | |
Heterocephalus glaber | naked mole-rat | Annotation Release 100 | |
Ictidomys tridecemlineatus | thirteen-lined ground squirrel | Annotation Release 100 | |
Jaculus jaculus | lesser Egyptian jerboa | Annotation Release 100 | |
Mesocricetus auratus | golden hamster | Annotation Release 100 | |
Microtus ochrogaster | prairie vole | Annotation Release 100 | |
Mus musculus | laboratory mouse | Annotation Release 103 | |
Build 37.2 | |||
Octodon degus | degu | Annotation Release 100 | |
Rattus norvegicus | rat | Annotation Release 104 | |
RGSC v3.4 |
Monotremes
Scientific name | Common name | Build | Tools |
---|---|---|---|
Ornithorhynchus anatinus | platypus | Build 1.2 |
Marsupials
Scientific name | Common name | Build | Tools |
---|---|---|---|
Monodelphis domestica | opossum | Build 2.2 | |
Sarcophilus harrisii | Tasmanian devil | Annotation Release 100 |
Other Mammals
Scientific name | Common name | Build | Tools |
---|---|---|---|
Ailuropoda melanoleuca | giant panda | AilMel_1.0 | |
Bos taurus | cattle | Annotation Release 103 | |
5.2 | |||
Bubalus bubalis | river buffalo | ||
Canis lupus familiaris | dog | Annotation Release 103 | |
Build 2.2 | |||
Capra hircus | goat | Annotation Release 100 | |
Ceratotherium simum simum | southern white rhinoceros | Annotation Release 100 | |
Condylura cristata | star-nosed mole | Annotation Release 100 | |
Dasypus novemcinctus | nine-banded armadillo | Annotation Release 100 | |
Echinops telfairi | small Madagascar hedgehog | Annotation Release 100 | |
Equus caballus | horse | Annotation Release 101 | |
Felis catus | cat | Annotation Release 100 | |
Mustela putorius furo | ferret | Annotation Release 100 | |
Ochotona princeps | American pika | Annotation Release 100 | |
Odobenus rosmarus divergens | Pacific walrus | Annotation Release 100 | |
Orcinus orca | killer whale | Annotation Release 100 | |
Oryctolagus cuniculus | rabbit | OryCun2.0 | |
Ovis aries | sheep | Annotation Release 100 | |
Sorex araneus | European shrew | Annotation Release 100 | |
Sus scrofa | pig | Annotation Release 104 | |
Sscrofa9.2 | |||
Trichechus manatus latirostris | Florida manatee | Annotation Release 100 | |
Tursiops truncatus | bottlenosed dolphin | Annotation Release 100 |
Other Vertebrates
Scientific name | Common name | Build | Tools |
---|---|---|---|
Anas platyrhynchos | mallard | Annotation Release 100 | |
Anolis carolinensis | green anole | Build 1.1 | |
Columba livia | rock pigeon | Annotation Release 100 | |
Danio rerio | zebrafish | Annotation Release 103 | |
Zv8 | |||
Falco cherrug | Saker falcon | Annotation Release 100 | |
Falco peregrinus | peregrine falcon | Annotation Release 100 | |
Ficedula albicollis | collared flycatcher | Annotation Release 100 | |
Gallus gallus | chicken | Annotation Release 102 | |
Build 2.1 | |||
Geospiza fortis | medium ground-finch | Annotation Release 100 | |
Maylandia zebra | zebra mbuna | Annotation Release 100 | |
Meleagris gallopavo | turkey | Build 1.1 | |
Melopsittacus undulatus | budgerigar | Annotation Release 100 | |
Oreochromis niloticus | Nile tilapia | Annotation Release 101 | |
Oryzias latipes | Japanese medaka | Annotation Release 100 | |
Pundamilia nyererei | Annotation Release 100 | ||
Taeniopygia guttata | zebra finch | Annotation Release 101 | |
Takifugu rubripes | Fugu | Annotation Release 100 | |
Xenopus (Silurana) tropicalis | western clawed frog | Annotation Release 101 | |
Build 1.1 | |||
Zonotrichia albicollis | white-throated sparrow | Annotation Release 100 |
Invertebrates
Insects
Scientific name | Common name | Build | Tools |
---|---|---|---|
Acyrthosiphon pisum | pea aphid | Build 2.1 | |
Build 1.1 | |||
Aedes aegypti | yellow fever mosquito | Aedes_aegypti_1.1 | |
Anopheles gambiae | African malaria mosquito | AgamP3.3 | |
Apis mellifera | honey bee | Amel_4.5 | |
Amel_4.0 | |||
Bombus terrestris | buff-tailed bumblebee | Bter_1.0 | |
Drosophila melanogaster | fruit fly | Release 5.30 | |
Drosophila pseudoobscura | Release 2.3 | ||
Drosophila virilis | Release 1.2 | ||
Nasonia vitripennis | jewel wasp | Build 2.1 | |
Build 1.1 | |||
Tribolium castaneum | red flour beetle | Build 2.1 |
Nematode
Scientific name | Common name | Build | Tools |
---|---|---|---|
Caenorhabditis briggsae | Build 1.1 | ||
Caenorhabditis elegans | nematode | WS195 | |
WS190 |
Echinoderms
Scientific name | Common name | Build | Tools |
---|---|---|---|
Strongylocentrotus purpuratus | purple sea urchin | Annotation Release 100 | |
Build 2.1 |
Cnidaria
Scientific name | Common name | Build | Tools |
---|---|---|---|
Hydra vulgaris | Annotation Release 101 | ||
Build 1.1 |
Other Invertebrates
Scientific name | Common name | Build | Tools |
---|---|---|---|
Amphimedon queenslandica | v1.0 | ||
Aplysia californica | California sea hare | Annotation Release 100 | |
Ciona intestinalis | vase tunicate | Annotation Release 101 | |
Build 1.1 | |||
Saccoglossus kowalevskii | Build 1.1 |
Protozoa
Scientific name | Common name | Build | Tools |
---|---|---|---|
Babesia bovis | Build 1.1 | ||
Cryptosporidium hominis | Build 1.1 | ||
Cryptosporidium parvum | Build 1.1 | ||
Dictyostelium discoideum | social amoeba | Build 2.1 | |
Eimeria maxima | |||
Eimeria tenella | |||
Giardia intestinalis | Build 1.1 | ||
Leishmania braziliensis | Build 1.1 | ||
Leishmania infantum | Build 1.1 | ||
Leishmania major | Build 1.1 | ||
Paramecium tetraurelia | Build 1.1 | ||
Plasmodium berghei | Build 1.1 | ||
Plasmodium chabaudi | Build 1.1 | ||
Plasmodium falciparum | Build 1.1 | ||
Plasmodium yoelii | Build 1.1 | ||
Tetrahymena thermophila | Build 1.1 | ||
Theileria parva | Build 1.1 | ||
Trichomonas vaginalis | Build 1.1 | ||
Trypanosoma brucei | Build 1.1 |
Plants
Flowering Plants
Monocots
Scientific name | Common name | Build | Tools |
---|---|---|---|
Aegilops tauschii | |||
Aegilops umbellulata | |||
Allium cepa | onion | ||
Asparagus officinalis | asparagus | ||
Avena atlantica x Avena hirtula | |||
Avena strigosa x Avena wiestii | |||
Brachypodium distachyon | Build 1.1 | ||
Cenchrus americanus | pearl millet | ||
Cocos nucifera | coconut palm | ||
Elaeis guineensis | African oil palm | ||
Eleusine coracana | finger millet | ||
Eragrostis tef | tef | ||
Festuca pratensis | meadow ryegrass | ||
Hordeum bulbosum | |||
Hordeum vulgare | barley | ||
Lolium perenne | ryegrass | ||
Musa acuminata | dwarf banana | ||
Oryza latifolia | |||
Oryza sativa | rice | RAP Build 3 | |
Secale cereale | rye | ||
Setaria italica | foxtail millet | Annotation Release 100 | |
Sorghum bicolor | sorghum | Sorbi1 | |
Triticum aestivum | wheat | ||
Triticum turgidum | durum wheat | ||
Zea mays | maize |
Eudicots
Scientific name | Common name | Build | Tools |
---|---|---|---|
Acacia mangium | |||
Antirrhinum majus | snapdragon | ||
Antirrhinum majus x Antirrhinum molle | |||
Apium graveolens | |||
Arabidopsis lyrata | lyrate rockcress | Arabidopsis lyrata v1.0 | |
Arabidopsis thaliana | thale cress | TAIR10 | |
Arachis duranensis x Arachis stenosperma | |||
Arachis stenosperma x Arachis cardenasii | |||
Beta vulgaris | beet | ||
Betula pendula | European white birch | ||
Boechera stricta | |||
Brassica juncea | brown mustard | ||
Brassica napus | rapeseed | ||
Brassica nigra | black mustard | ||
Brassica oleracea | |||
Brassica rapa | field mustard | ||
Camellia sinensis | black tea | ||
Capsicum annuum | pepper | ||
Capsicum annuum x Capsicum chinense | |||
Capsicum annuum x Capsicum frutescens | |||
Carica papaya | papaya | ||
Carya illinoinensis | pecan | ||
Castanea dentata x Castanea mollissima | |||
Cicer arietinum | chickpea | Annotation Release 100 | |
Citrus maxima | yu | ||
Coffea canephora | robusta coffee | ||
Corylus avellana | European hazelnut | ||
Cucumis melo | muskmelon | ||
Cucumis sativus | cucumber | Annotation Release 100 | |
Cynara cardunculus var. scolymus | globe artichoke | ||
Daucus carota | carrot | ||
Eucalyptus globulus | blue gum | ||
Eucalyptus grandis | |||
Eucalyptus grandis x Eucalyptus urophylla | |||
Eucalyptus nitens | |||
Eucalyptus urophylla | |||
Fragaria vesca | wild strawberry | Annotation Release 100 | |
Fragaria vesca x Fragaria nubicola | |||
Glycine max | soybean | Build 1.1 | |
Helianthus annuus | common sunflower | ||
Hevea brasiliensis | siringa | ||
Lablab purpureus | natoba | ||
Lens culinaris | lentil | ||
Limnanthes alba | white meadowfoam | ||
Lotus japonicus | birdsfoot deervetch | ||
Lupinus angustifolius | narrow-leaved blue lupine | ||
Manihot esculenta | cassava | ||
Medicago sativa | alfalfa | ||
Medicago truncatula | barrel medic | Build 1.1 | |
Nicotiana acuminata | acuminate tobacco | ||
Nicotiana tabacum | common tobacco | ||
Nicotiana tomentosiformis | |||
Phaseolus vulgaris | kidney bean | ||
Populus trichocarpa | poplar | Build 2.3 | |
Prunus armeniaca | apricot | ||
Prunus cerasifera | cherry plum | ||
Prunus dulcis | sweet almond | ||
Prunus dulcis x Prunus persica | |||
Prunus persica | peach | ||
Prunus persica x Prunus dulcis | |||
Pyrus communis | pear | ||
Pyrus pyrifolia | sha li | ||
Quercus robur | oak | ||
Rosa chinensis | China rose | ||
Rosa hybrid cultivar | |||
Rosa lucieae | memorial rose | ||
Rosa multiflora | Japanese rose | ||
Rubus idaeus | red raspberry | ||
Salix viminalis | osier | ||
Silene vulgaris | bladder campion | ||
Solanum lycopersicoides | nightshade | ||
Solanum lycopersicum | tomato | Annotation Release 100 | |
Solanum melongena | eggplant | ||
Solanum peruvianum | Peruvian tomato | ||
Solanum tuberosum | potato | ||
Theobroma cacao | cocoa | ||
Trifolium pratense | rotklee | ||
Turnera subulata x Turnera krapovickasii | |||
Vigna angularis | adzuki bean | ||
Vigna radiata | mungbean | ||
Vigna umbellata | rice-bean | ||
Vigna unguiculata | cowpea | ||
Vitis vinifera | wine grape | IGGP build 2 | |
IGGP build 1 |
Conifers
Cypress
Firs
Pines
Scientific name | Common name | Build | Tools |
---|---|---|---|
Pinus elliottii | slash pine | ||
Pinus pinaster | maritime pine | ||
Pinus sylvestris | Scots pine | ||
Pinus taeda | loblolly pine | ||
Pinus thunbergii | Japanese black pine |
Spruce
Algae
Green Algae
Scientific name | Common name | Build | Tools |
---|---|---|---|
Chlamydomonas reinhardtii | Build 1.1 | ||
Ostreococcus 'lucimarinus' | Build 2.0 |
Red Algae
Moss
Scientific name | Common name | Build | Tools |
---|---|---|---|
Physcomitrella patens | Build 1.1 |
Fungi
Scientific name | Common name | Build | Tools |
---|---|---|---|
Aspergillus clavatus | Build 1.1 | ||
Aspergillus fumigatus | Annotation Release 100 | ||
Aspergillus niger | Build 1.1 | ||
Candida glabrata | Build 1.1 | ||
Cryptococcus neoformans | Build 2.1 | ||
Debaryomyces hansenii | Build 1.1 | ||
Encephalitozoon cuniculi | Build 1.1 | ||
Eremothecium gossypii | Build 3.1 | ||
Fusarium graminearum | Build 1.2 | ||
Kluyveromyces lactis | Build 1.1 | ||
Magnaporthe oryzae | rice blast fungus | Build 3.1 | |
Neurospora crassa | Build 2.1 | ||
Saccharomyces cerevisiae | baker's yeast | Build 3.1 | |
Build 2.1 | |||
Scheffersomyces stipitis | Build 1.1 | ||
Schizosaccharomyces pombe | fission yeast | Annotation Release 101 | |
Build 1.1 | |||
Ustilago maydis | Build 1.1 | ||
Yarrowia lipolytica | Build 1.1 |