Immunofluorescent Staining of Cell Surface Antigens for Flow Cytometric Analysis (FACS Analysis)
Introduction
Precautionary Note
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Prior to using antibodies, do a quick spin to recover the maximum volume from the vials.
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We monitor our conjugated antibodies to make sure they are void of aggregation. Some protocols include a step of airfuging the antibody prior to staining to further clear aggregates.
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For optimal performance of fluorochrome conjugated antibodies, store at 4°C in the dark. Do not freeze.
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When staining, please note that fixation and/or delayed analysis may yield poor signal-to-noise for certain antigens. For best results, stain fresh mouse cells and analyze soon after staining.
Procedure Overview
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Making a single cell suspension from peripheral blood, lymphoid tissues or cultured cell lines
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Staining cells with antibodies (either as a directly fluorochrome-conjugated antibody or in successive steps of unlabelled antibody and fluorochrome-conjugated secondary reagents)
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Washing steps to remove all unbound reagents
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Running and analyzing on a flow cytometer
Note: In setting up a flow cytometry staining experiment it is important that all experimental conditions are optimized. Critical parameters include target cell, antibody titer and kinetics.
Useful Links
Materials
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12x75 mm round-bottom test tubes (Falcon Cat. No. 2008) or 96-well round-bottom microtiter plates (Falcon Cat. No. 3910)
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Primary antibodies (either purified or conjugated)
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Anti-CD16/CD32 for blocking of Fc-mediated interactions
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Secondary reagents, if using indirect staining
Buffers
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eBioscience Flow Cytometry Staining Buffer (Cat. No. 00-4222)
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Sheath fluid for flow cytometer
Instruments
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Pipettes and pipettors
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Centrifuge
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Ice bucket or refrigerator
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Flow cytometer
Experiment Duration
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1/2 hour cell preparation
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1/2 hour antibody dilution and sample preparation
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1/2 or 1-1/2 hour incubation depending on the procedure
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1/2 hour or longer running and analyzing depending on number of samples
Method
Cell Preparation:
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Harvest tissue (spleen, lymph nodes, thymus) and tease it apart into single cell suspension by pressing with plunger of a syringe or by mashing between two frosted microscope slides using 10 ml of Staining Buffer.
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Transfer into a 50ml conical tube and allow the big clumps and debris to settle to the bottom or run the suspension through a nylon mesh (Falcon Cat. No. 2350) to get single cell suspension.
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Centrifuge cell suspension 4-5 min (300-400xg) at 4°C, and discard supernatant.
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If using spleen, perform an RBC lysis; otherwise, go to the next step.
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Resuspend the samples in 50ml of Staining Buffer and perform a cell count and viability analysis (e.g. Trypan Blue).
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Spin cells again, discard supernatant, and resuspend cells in Staining Buffer at 2x107/ml. If using labeled primary antibodies, pre-incubate the cells with 0.5-1µg of anti-CD16/CD32 per million cells for 5-10 minutes on ice prior to staining.
Antibody Preparation and Incubation:
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Dilute to previously-determined optimal concentration of primary antibody in 50µl of Staining Buffer and dispense to each test tube or well of a microtiter plate. Dispense 50µl of Staining Buffer into the unstained or negative control tube. For titration studies, as a general rule, titrations in the range of 2-0.03µg/million cells should be performed.
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Add 50µl of cell suspension (equal to 106 cells) to each tube or well; mix gently.
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Incubate 20 minutes in the dark on an ice bath or in a refrigerator.
Note: Some antibodies may require longer incubation times. Determine these conditions in your preliminary experiments.
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After the incubation period, add Staining Buffer (2ml for tubes or 200µl for microtiter plates).
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Centrifuge cells for 5 minutes (300-400xg) at 4°C. Aspirate supernatant.
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Repeat 2 times for a total of 3 washes.
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Resuspend stained cell pellet and analyze samples on a flow cytometer.
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If using fluorochrome-labeled antibodies, resuspend stained cell pellet in 500µl of Staining Buffer and run on a flow cytometer.
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If using purified- or biotin-labeled antibodies, add the proper second step (a fluorochrome-conjugated secondary antibody or -Avidin) in 50-100µl of Staining Buffer to each sample. Incubate in the dark for 15-30 minutes on an ice bath or in a refrigerator. Wash 2 times as above (Steps 4 and 5). Resuspend stained cell pellet in 500µl of Staining Buffer and run on a flow cytometer.
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For discrimination of viable and dead cells, stain with a viability dye.
Note: If performing multiple color staining, add fluorochrome-labeled antibodies simultaneously and follow incubations and washing steps as mentioned above. Keep all steps in the cold and keep samples protected from light when working with fluorescent antibodies.
Materials
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12x75 mm test tubes (Falcon Cat. No. 2008)
-
Primary antibodies (either purified or conjugated)
-
Secondary reagents, if using indirect staining
Buffers
-
eBioscience Flow Cytometry Staining Buffer (Cat. No. 00-4222)
-
Sheath fluid for cytometer
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eBioscience 1X RBC Lysis Buffer (Cat. No. 00-4333)
Instruments
-
Pipettes and pipettors
-
Centrifuge
-
Ice bucket or refrigerator
-
Flow cytometer
Experiment Duration
-
1/2 hour antibody dilution and sample preparation
-
1/2 or 1-1/2 hour staining depending on the procedure
-
1/2 hour or longer running and analyzing depending on number of samples
Method
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Dilute to previously-determined optimal concentration of purified or biotin-conjugated antibody in 50µl of Staining Buffer and dispense to each test tube. Dispense 50µl of Staining Buffer into the unstained or negative control tube. eBioscience fluorochrome-conjugated anti-human antibodies are pretitrated for optimal performance and should be used at 20µl per sample.
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Add 100µl of whole blood to each tube, mix gently.
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Incubate 15-30 minutes at room temperature in the dark. Note: Some antibodies with low affinity binding may require longer incubation times. Determine these conditions in your preliminary experiments.
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Add 2ml of 1X RBC Lysis Buffer (pre-warmed to room temperature) per tube, mix gently.
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Incubate samples in the dark at room temperature for 10 minutes. Do not exceed 15 minutes of incubation with the RBC Lysis Buffer.
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Spin samples (300-400xg) at room temperature, aspirate supernatant and wash 1 time with 2ml of Staining Buffer.
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Resuspend stained cell pellet and analyze samples on a flow cytometer.
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If using fluorochrome-labeled antibodies, resuspend stained cell pellet in 500µl of Staining Buffer or 2% formaldehyde fixation buffer and run on a flow cytometer.
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If using purified- or biotin-labeled antibodies, add the proper second step (a fluorochrome-conjugated secondary antibody or -Avidin) in 50-100µl of Staining Buffer to each sample. Incubate in the dark for 15-30 minutes at room temperature. Wash 1-2 times as above (Step 6). Resuspend stained cell pellet in 500µl of Staining Buffer or 2% formaldehyde fixation buffer and run on a flow cytometer.
Note: If performing multiple-color staining, add antibodies simultaneously and follow incubations and washing steps as mentioned above. Keep samples protected from light when working with fluorochrome-labeled antibodies.