MrBayes 3: Bayesian phylogenetic inference under mixed models

F Ronquist, JP Huelsenbeck - Bioinformatics, 2003 - academic.oup.com
Bioinformatics, 2003academic.oup.com
MrBayes 3 performs Bayesian phylogenetic analysis combining information from different
data partitions or subsets evolving under different stochastic evolutionary models. This
allows the user to analyze heterogeneous data sets consisting of different data types—eg
morphological, nucleotide, and protein—and to explore a wide variety of structured models
mixing partition-unique and shared parameters. The program employs MPI to parallelize
Metropolis coupling on Macintosh or UNIX clusters. Availability: http://morphbank. ebc. uu …
Abstract
Summary: MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types—e.g. morphological, nucleotide, and protein—and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
Availability: http://morphbank.ebc.uu.se/mrbayes
Contact: fredrik.ronquist@ebc.uu.se
Oxford University Press
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